Sequence
atgc intronic sequence ATGC exonic sequencegtaatatatttaaattgccttttatttgatatccttctatcctaaagtgatggtttccacttctaatcatatatggtttttgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGTCCAATTGCATATTTTTACTTTGATCCATATTCTCGTCCATCTGAGAAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA01G02480.1 (Glycine max), 3'ss of exon 9
gtaatatatttaaattgccttttatttgatatccttctatcctaaagtgatggtttccacttctaatcatatatggtttttgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGTCCAATTGCATATTTTTACTTTGATCCATATTCTCGTCCATCTGAGAAAC
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gtaaactagatacccttctgttaagattcgattcttgtatgaggagcatctattttaaacttcctaacacaagta-ttcttattc---agGTCTGGAATAATGATGTCAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAA
upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G33490.1 (Glycine max), 3'ss of exon 9
gtaatatatttaaattgccttttatttgatatccttctatcctaaagtgatggtttccacttctaatcat---atatggtttttgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGTCCAATTGCATATTTTTACTTTGATCCATATTCTCGTCCATCTGAGAAAC
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---gtaaact-agattcccttctgttcagatttgat---tcttgtagggggagcatctattataaacttcctaacacaagtattgttattcagGTCTGGAATAATGATGTTAGGTTCTTCTGTGTTAAGGATTCTTCTGGTAGTCCAATTGCGTATTTTTATTTTGATCCTTATAGTCGTCCTGCTGAAAAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110732181|gb|EE107245.1|EE107245EST: CTAAGATGCTTTTTGGAATTGACATTGAGCCAGCTGATGGTCTTGCTCCA GTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGT
genomic: CTAAGATGCTTTTTGGAATTGACATTGAGCCAGCTGATGGTCTTGCTCCAgtaatatatt ... tgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctatcctaaagtgatggtttccacttctaatcatatatggtttttgctccttagGTTTGGAACAATGATGTGAGATTCTACTGTGTGAAAGACACTGCAGGTAGTCCAATTGCATATTTTTACTTTGATCCATATTCTCGTCCATCTGAGAAAC
ttctaat putative branch site (score: 2)
tttttgctcctt putative PPT
ttctaatcatatat TA-rich tract