1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgaaatatcatcaacgctctctctcccttctctctccctctttccctctctccctctcaatattttgagtggatgaattgaaattcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCTAAGAAGATAAAGAGAGAAGCAGCAGCCAGGGAAAAGGAAGCAATATCAA
species | Vitis vinifera |
transcript | Vv00s0194g00260.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCCAG ATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCTEST: gi|110392216|gb|EC957479.1|EC957479
genomic: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCAAGgtgaaatatc ... tcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCT
EST: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCAAG ATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCTEST: gi|352764534|gb|FQ472891.1|FQ472891
genomic: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCAAGgtgaaatatc ... tcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCT
EST: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCAAG ATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCT
genomic: CCTGTGAGGTGAAGAACAATACTTTGACTGCTAAAGATGATGAAATCAAGgtgaaatatc ... tcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCT
ctttccctctctccctctcaatattttgagtggatgaattgaaattcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCTAAGAAGATAAAGAGAGAAGCAGCAGCCAGGGAAAAGGAAGCAATATCAA
ttcttttcc CT-rich tract
aattgaaattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatatcatcaacgctctctctcccttctctctccctctttccctctctccctctcaatattttgagtggatgaattgaaattcttttccagATGCTCATGAGGAAAGTTGATGCACTGAGTAAAGCCATCGAAGTAGAGTCTAAGAAGATAAAGAGAGAAGCAGCAGCCAGGGAAAAGGAAGCAATATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA