1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagctttatgcttgcctaaagttgtcaggcctgaacttgaatgcaggttgggaattattcactactatttctcaaacagattattttccttcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG
species | Vitis vinifera |
transcript | Vv19s0176g00140.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCEST: gi|110424617|gb|EC990984.1|EC990984
genomic: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgt ... tcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
EST: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCEST: gi|110379205|gb|EC944385.1|EC944385
genomic: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgt ... tcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
EST: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCEST: gi|33404787|gb|CF210414.1|CF210414
genomic: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgt ... tcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
EST: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCEST: gi|56409696|gb|CX017948.1|CX017948
genomic: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgt ... tcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
EST: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATG GCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
genomic: TAGGGGATCATGTGCATTCGACGCGTATAGCTTTTGTTGAATTTGCAATGgtgagtttgt ... tcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACC
ggttgggaattattcactactatttctcaaacagattattttccttcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG
ttattttccttcat CT-rich tract
aaacagattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctttatgcttgcctaaagttgtcaggcctgaacttgaatgcaggttgggaattattcactactatttctcaaacagattattttccttcatgtgcagGCAGAAAGTGCCATTGTTGCGCTGAATTGTAGTGGGCTGGTCTTGGGGACCCAACCCATCAG
- - - - - cttgcct
- - - - - - - - - - - -gtcaggc
- - - - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - -ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaac