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gtaagacacattcttataattcttcatctttcagatagatttcaagagattctaaaatgtttctgtttctcccttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAACAAGTATTTCCGTCATGCTACTGGGCAGCTATATGCTATTTCAAAAGAT
species | Vitis vinifera |
transcript | Vv19s0090g00560.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGGATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|349826233|gb|FQ416038.1|FQ416038
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|71875910|gb|DT024965.1|DT024965
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|77583730|gb|DV220900.1|DV220900
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|34544220|gb|CF512452.1|CF512452
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGGATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|71875911|gb|DT024966.1|DT024966
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|110385919|gb|EC950479.1|EC950479
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|351046999|gb|FQ454609.1|FQ454609
genomic: CATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|110712361|gb|EE089898.1|EE089898
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAAEST: gi|351056608|gb|FQ442436.1|FQ442436
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
EST: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAA GGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
genomic: CCTAGGATTTACATTGGATGCATGAAATCTGGACCTGTTCTAGCTCAAAAgtaagacaca ... ttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAA
tttcagatagatttcaagagattctaaaatgtttctgtttctcccttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAACAAGTATTTCCGTCATGCTACTGGGCAGCTATATGCTATTTCAAAAGAT
ttctaaa putative branch site (score: 2)
tgtttctgtttctccc CT-rich tract
attctaaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacacattcttataattcttcatctttcagatagatttcaagagattctaaaatgtttctgtttctcccttatgaacagGGGAGTCAGATACCATGAACCTGAATACTGGAAATTTGGTGAGGAGGGTAACAAGTATTTCCGTCATGCTACTGGGCAGCTATATGCTATTTCAAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT