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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcttcttctcttatcatagcatttatagggatgccttctatggctatagctctcaagatcttactgccttctattctaatttctaagattagatgtgaagtactactcctatcacttgtaactgtgctttgtcatcttaaggttcacttttttatttgtttttcacttttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC

Basic information

species Vitis vinifera
transcript Vv19s0027g01660.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA15G28380.1 (Glycine max), 3'ss of exon 8
gtgagtgcttcttctcttatcatagcatttatagggatgccttctatggctatagctctcaagatcttactgccttctattctaatttctaagattagatgtgaagtactactcctatcacttgtaactgtgctttgtcatcttaaggttcacttttttatttgtttttcacttttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
||||||  | ||| |||     |    ||||| |        ||| ||    ||  | ||| |   | ||  ||  |    |    ||        | || | |||| |  | ||   | |      |    |    ||  | ||          | ||| |  |||||  ||||    |  ||||||||||||||||||| ||||||||||| |||||||||||   |  
gtgagtaatccttttctc----tgtggtttatgga-------tctgtg----taagtatcatgtcgtcaccccccccccccccccctt--------aaatttcaagttcccccccccccccc-----cccccccccctccccatag--------ctgttagtaatttttttctttaaattttagGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCAAT

upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G00460.1 (Glycine max), 3'ss of exon 8
gtgagtgcttcttctcttatcatagcatttatagggatgccttctatggctatagctctcaagatcttactgccttctattctaatttctaagattagatgtgaagtactactcctatcacttgta-actgtgctttgtcatcttaaggttcacttttttatttgtttttcacttttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
||||||  | ||| |||       |  ||| || ||||           || ||  | ||| | || | |  ||  |       |||  ||   |||  |   || |   |     |  ||||| | ||  |  |||  ||  ||     |       ||| |  |||||  ||||    |  |||||||||| |||||||| ||||||||||| |||||||||||   |  
gtgagtaatccttttct-------gtgttt-tatggat-----------ctgtaagtatcatg-tcctcccccccccccccgcgattgttac--ttatgt---aactgtcaggatgaggacttgcatacaatattttcacactttggaactg------ttagtaatttttttctttaaattttagGATGAGGATTTGCATACAATATTTTCACGCTTTGGAACTGTATCAAT

upper sequence: Vv19s0027g01660.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA19G00460.1 (Glycine max), 3'ss of exon 8
gtgagtgcttcttctcttatcatagcatttatagggatgccttctatggctatagctctcaagatcttactgccttctattctaatttctaagattagatgtgaagtactactcctatcacttgta-actgtgctttgtcatcttaaggttcacttttttatttgtttttcacttttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
||||||  | ||| |||       |  ||| || ||||           || ||  | ||| | || | |  ||  |       |||  ||   |||  |   || |   |     |  ||||| | ||  |  |||  ||  ||     |       ||| |  |||||  ||||    |  |||||||||| |||||||| ||||||||||| |||||||||||   |  
gtgagtaatccttttct-------gtgttt-tatggat-----------ctgtaagtatcatg-tcctcccccccccccccgcgattgttac--ttatgt---aactgtcaggatgaggacttgcatacaatattttcacactttggaactg------ttagtaatttttttctttaaattttagGATGAGGATTTGCATACAATATTTTCACGCTTTGGAACTGTATCAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013338|gb|FQ425043.1|FQ425043
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351056299|gb|FQ454160.1|FQ454160
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351019880|gb|FQ439697.1|FQ439697
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|349829098|gb|FQ419630.1|FQ419630
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351021566|gb|FQ429670.1|FQ429670
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|349828467|gb|FQ417209.1|FQ417209
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATCTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351029259|gb|FQ436653.1|FQ436653
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351015245|gb|FQ445529.1|FQ445529
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|352786284|gb|FQ478895.1|FQ478895
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351014040|gb|FQ434192.1|FQ434192
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|349824097|gb|FQ417484.1|FQ417484
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351014258|gb|FQ434847.1|FQ434847
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351019573|gb|FQ439390.1|FQ439390
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351030963|gb|FQ438999.1|FQ438999
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351030959|gb|FQ438995.1|FQ438995
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351015056|gb|FQ444345.1|FQ444345
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351052152|gb|FQ450722.1|FQ450722
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCGTATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|351036687|gb|FQ457400.1|FQ457400
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         CATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTCATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
EST: gi|349832490|gb|FQ421051.1|FQ421051
EST:     AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAA                         GATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
genomic: AGCCTCCTGACAATGTGCTATTTGTTTGTAAACTGAATCCAGTTACTGAAgtgagtgctt ... ttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctttgtcatcttaaggttcacttttttatttgtttttcacttttttctgcagGATGAGGACTTGCATACCATATTTTCACGTTTTGGAACTGTGATATC
                   ttcacttttttatttg  CT-rich tract
                      acttttttatttgttt  TA-rich tract