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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcatctgctctgtttctgtggcaatgacctactataatcaaatttatgcatctctctgaaggctgaaagtggaagcatgtgctgattttgaatctctgatccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGGAACCCTGATGGTGTAACTTTTGCCACTGGGAACCAGGACAAAACCTGCC

Basic information

species Vitis vinifera
transcript Vv19s0015g01750.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G12500.1 (Glycine max), 3'ss of exon 9
gtattcatctgctctgtttctgtggcaatgacctactataatcaaatttatgcatctctctgaaggctgaaagtggaagcatgtgc-tgattttgaatctctgatccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGGAACCCTGATGGTGTAACTTTTGCCACTGGGAACCAGGACAAAACCTGCC
   || | |||| |    ||    |   |     |||  ||    |||| |||    |  || |  |  | || |     |  |    ||||||   ||| |    |||||||||| |  | || || | ||||||||| |||||||||||||||||  ||||| | ||||||||||| || ||||||||||| |||||||||||||||||||
---ttaaactgcacacactcca--gttttttttaactggaaa-ggatttgtgc---ccgttgtatcccaagagagcttatagttatacgattttttgtctgt----cttgcagACAATTGTTCCCTTATCTGGGCACTTTGATTATTCATTTGCATCATCATGGCATCCTGATGGTGTGACCTTTGCCACTGGAAACCAGGACAAAACCTGCC

upper sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G56190.2 (Arabidopsis thaliana), 3'ss of exon 9
gtattcatctgctctgtttctgtggcaatgacctactataatcaaatttatgcatctctctgaaggctgaaagtggaagcatgtgctgattttgaatctctgatccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGGAACCCTGATGGTGTAACTTTTGCCACTGGGAACCAGGACAAAACCTGCC
                     ||    |  |     | |   |      ||  || || |||  ||  |    ||||  | |  |    |||||| | |       || |||||  ||  | |  |    || ||||| ||||||||||||||||| || ||| | ||  | |||||||| |||||||| || ||||| ||||| ||||| |
---------------------gtacttaacattc-ttcttcccggcaccatctatttcactgcgggtaggtcttggagccttacg---gttttgagttttg-----tttcagACGATCGGGACGCTAAAAGGTCACTTAGATTATTCATTTGCATCAGCTTGGCATCCAAACGGTGTAACATTTGCCACAGGAAACCAAGACAAGACCTGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30328304|gb|CD011566.1|CD011566
EST:     TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG                         ACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG
genomic: TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAGgtattcatct ... atccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG
EST: gi|32249634|gb|CD715453.1|CD715453
EST:     TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG                         ACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG
genomic: TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAGgtattcatct ... atccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG
EST: gi|32270441|gb|CD719600.1|CD719600
EST:     TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAG                         ACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG
genomic: TTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAGgtattcatct ... atccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgaaggctgaaagtggaagcatgtgctgattttgaatctctgatccttgcagACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGGAACCCTGATGGTGTAACTTTTGCCACTGGGAACCAGGACAAAACCTGCC
                                              tccttgc  CT-rich tract
                               attttgaat  TA-rich tract