Sequence
atgc intronic sequence ATGC exonic sequence...cttcaaatttgtcttttgtaatgcctttccaagctaggcttttgtcaaggcatattttttacaagttgtctgaaattttccttgctgaatggatttacagAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01740.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G19540.1 (Glycine max), 3'ss of exon 8
---cttcaaatttgtcttttgtaatgcctttccaagctaggcttttgtcaaggcatattttttacaagttgtctgaaattttccttgctgaatggatttacagAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGG---
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aagtttggtgagagtgattggtaccgtacttgcatttttcttttccttcaaaat-catctgaattaaattgtctgatatttcattagtcacatgg--caacagAAGCTATGTTATGTTGCTGTTGACTATGAAGCTGAGCTTTTGAAAGATACTCAAGCATCATTTGAAGCTGTA---GAAGGGTTGTTTACACTCTCAAAAGAGC
upper sequence: Vv19s0015g01740.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G12490.1 (Glycine max), 3'ss of exon 8
--cttcaaatttgtcttttgtaatgcctttccaagctaggcttttgtcaaggcatattttt-tacaagttgtctgaaattttccttgct-gaatggatttacagAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGG
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agtgtggtgggaatgattagtatccatcttgcagattt--cttttacttaaatgtcttctcacagaagttgtttggtatttttttcgtttgcatgg--caacagAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaggcatattttttacaagttgtctgaaattttccttgctgaatggatttacagAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGG
atattttttacaagtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttcaaatttgtcttttgtaatgcctttccaagctaggcttttgtcaaggcatattttttacaagttgtctgaaattttccttgctgaatggatttacagAATCTGTGTTATGTTGCTGCTGACTATGAAGCTGAGCTATCCAAAGATACACGGGCATCATTTCAAGTTGCATCAGAAGGTTGGTTTACTCTTTCGAGGG
- - - - - - - - - - - -cctttcc
- - - - - - - - - - - - - - - - - - - - - - -caaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtctga