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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcattttcctggcttgcatttcatgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG

Basic information

species Vitis vinifera
transcript Vv19s0015g01320.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g04630.1 (Oryza sativa), 3'ss of exon 8
------------------gtgagcattttcctggcttgcatttcatgtg--ttactgttcttaatttc--ctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
                   ||   |   || ||  |  ||||| || |    ||    | | || |||   |     |    |  | |||| | |||||||||||  | |||||||||||||| ||||| | ||||||||| ||||||| |
gtaagcaccagcttgcaattggcaacaatcttgaataacattttatttacactaaaaatgtaaacttctatttttgtttttttatgtttttgtacagGACATTTCTCTTGGAGTGGCAATAGGATCATCGATACAGATATCCATGTTTGGG

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA18G08030.1 (Glycine max), 3'ss of exon 9
gtgagcattttcctggcttgcattt-catgtgttactgttctta-atttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
|||||  ||    |  |||| | |  ||  ||| |       || |||   |  |||     |||   || ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
gtgaggtttcagtt--cttgtactcacacatgtgaacacatatatattcattttaacgagtttca---ttcctgcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 7
gtgagcattttcctggcttgcatttcatgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
|||||  |||   ||   ||| |  |||   |   ||  |  |  ||| ||  | |    |     |||||| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
gtgaggttttgattgttctgc-tcacatacctgcgtgcacacatattcatattaataggtttta--tttctgtagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G21910.2 (Glycine max), 3'ss of exon 5
gtgagcattttcctggcttgcattt---catgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG----------------------------------------------
|||||  ||    |  |||| |||    |||||||| |  |   ||  ||| ||  | | |  |    | ||  ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |                                              
gtgaggtttcagtt--cttgtattcacacatgtgttcccatatata--ttcatattaataagttttattctt--gcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTGGCAAGTATTATATATTTATATTGTATGGATGAGATTGAATTACTAT

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G21910.1 (Glycine max), 3'ss of exon 5
gtgagcattttcctggcttgcattt---catgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
|||||  ||    |  |||| |||    |||||||| |  |   ||  ||| ||  | | |  |    | ||  ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |
gtgaggtttcagtt--cttgtattcacacatgtgttcccatatata--ttcatattaataagttttattctt--gcagGACATTTCCTTAGGAGTAGCAATTGGGTCATCCACACAGATATCTATGTTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcatgtgttactgttcttaatttcctagaactcacctcagcttttctgcagGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCG
                                aactcac  putative branch site (score: 2)
                                            cttttctgc  putative PPT
                 ttcttaattt  TA-rich tract