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gtaatatgttgcttaattctctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCTCCTGGCGAG
species | Vitis vinifera |
transcript | Vv19s0014g05210.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAAACCAAGAAA-AGTCEST: gi|110378718|gb|EC943862.1|EC943862
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAA-CCAAGGAACAGTC
EST: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCTEST: gi|352791431|gb|FQ481010.1|FQ481010
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
EST: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG AGTGTTGATAATGAAATTGTGTTATGGGAAACCCAAAAC-AAGGAACAGTCEST: gi|351033874|gb|FQ447912.1|FQ447912
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAA-CCCAAAACCAAGGAACAGTC
EST: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAG AGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
genomic: CAAACTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTGTCCAAGgtaatatgtt ... ctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCT
gaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCTCCTGGCGAG
tactgat putative branch site (score: 2)
ccttttgtgctttttc putative PPT
ataattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatgttgcttaattctctatttgtgggtctaaaactgaaagtggagttacatagtggaagaagtattatatgttgacgaaacataccctagatagctttttcttcagaagctagatactgataattcttatgtcagtgcataccttttgtgctttttccagAGTGTTGATAATGAAATTGTGTTATGGGAACCCAAAACCAAGGAACAGTCTCCTGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA