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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggattcttttctcatctattgtgattacatagtttttgagaatttgtttgtgctactggaaattgtttttgatgctccctttatttgattcagAAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG

Basic information

species Vitis vinifera
transcript Vv19s0014g04740.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351017257|gb|FQ435609.1|FQ435609
EST:     TGGTAATAGCGTATAACTGGATACGATTTGATGAAAACTTTTCTAAAAAG                         AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTT
genomic: TGGTAATAGCGTATA-CTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTT
EST: gi|352786282|gb|FQ478893.1|FQ478893
EST:     TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG
EST: gi|22011789|gb|BQ796823.1|BQ796823
EST:     TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG
EST: gi|351041305|gb|FQ447432.1|FQ447432
EST:     TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAACTTCTA
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTA
EST: gi|349809129|gb|FQ398926.1|FQ398926
EST:     TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAACTTCTAGTCCCTTT
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGTCCCTTT
EST: gi|351056793|gb|FQ443420.1|FQ443420
EST:     TTGATAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAACTTCTAGT
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGT
EST: gi|351038453|gb|FQ464319.1|FQ464319
EST:     TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAG                         AAATTTAAAATTTCTAGTCC
genomic: TTGGTAATAGCGTATACTGGATACGATTTGATGAAGACTTTTCTAAAAAGgtggattctt ... tttgattcagAAATTTAAAACTTCTAGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatttgtttgtgctactggaaattgtttttgatgctccctttatttgattcagAAATTTAAAACTTCTAGTCCCTTTGGTATCAAGTACAAGTTCCACCTAGAG
                                  tgctccctttattt  CT-rich tract
                     aaattgtttttgat  TA-rich tract