Sequence
atgc intronic sequence ATGC exonic sequence...acatatttatgcagtttatatgttttattcagttatttcagttactacctcaataaggaaaagattagaataatctcttattctctttccattaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G36650.1 (Glycine max), 3'ss of exon 7
acatatttatgcagtttatatgttttattcagttatttcagttactacctcaataaggaaaagattagaataatctcttattctctttcca-ttaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
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gtgcatgctattagattgcattataaatctgtatatggagctttattcttctttatatggaacaataacaccacct-ttgttctctgcttactttgtgcagCCGAGATCGACTATTGGTGGCTCTTGGCTTAGATTTATTTGCCGTGAAAGATGAGAAATTCATGGACATGTTTGTTGCTCCTGGTGCAATAGATGTGCTA
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G23480.1 (Glycine max), 3'ss of exon 7
acatatttatgcagtttatatgttttattcagttatttcagttacta--cctcaata-aggaaaagattagaataatctcttattctctt--tccattaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
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-----cttacgaagaactttattcagcctcagtatatggagctttcattcttctttatatggaacaataacaccccacctttgttctgttgcttactttgtgcagCCGAGATCGGCTATTCGTGGCTCTTGGCTTAGATTTATTTGCTGTGAACGATGAGAAATTCATGGACATGTTTGTTGCTCCGGGTGCCATAGATGTGCTA
upper sequence: Vv19s0014g02500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G53140.1 (Arabidopsis thaliana), 3'ss of exon 7
acatatttatgcagtttatatgttttattcagttatttcagttactacctcaata-aggaaaagattagaataatctcttattctctttccattaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
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---------------gtgagttttctattgatgaatgtcc-ttagtttcttagtagaggaaggaaacattttgatttgatattctgtttgtttt--tgcagCCGAGACAGACTAGTGGTGGCACTTGGATTGGATCTATTTGCAGTGAATGACGACAAGTTCATGGACATGTTCGTTGCTCCTGGAGCCATTGTGGTACTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacctcaataaggaaaagattagaataatctcttattctctttccattaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
cattaat putative branch site (score: 3)
tctcttattctctttc CT-rich tract
aaaagattagaataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatatttatgcagtttatatgttttattcagttatttcagttactacctcaataaggaaaagattagaataatctcttattctctttccattaatgcagCCGGGATCGACTTATGATGGCACTTGGATTGGATTTGTTTGCTGTAAACGACGAGAAATTCATGGATATGTTTGTTGCACCTGGGGCAATCGATATCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - -tatgcag
- - - - - - - - - - - - - - - - - - - - - - ctacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataa