Sequence
atgc intronic sequence ATGC exonic sequence...gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G027756_T02 (Zea mays), 3'ss of exon 4
-------gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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tttaaattttatggcaaaatattctctttgaaaaattacattgattaaagggtgagcatttgtactgctggtctgc-------tgctaatgatttcaaactgttcagACATTTGTTGGAACTCCCTTTTGGATGGCACCTGAGGTTATTCAAAATTCTGAAGGGTACAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G35510.1 (Glycine max), 3'ss of exon 7
-gctaggaac-caatgaacatgtctaaaagttgaatggatcgaatgcctcttact--tcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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tgcatttaatactttgtgca-attgaaaaatcacttagatttttaaatttttactcttcatctttgactggatatgctaacattttt---ttttatcataacagACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATACAGATGGATATAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G34970.1 (Glycine max), 3'ss of exon 8
-----gctaggaaccaatgaacatgtctaaaagttgaat--ggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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atactttgtgcaattaaaaaatcacttggagttctaaattagtactctacagctcttcatctttgactggatacatatttttttttttatatc-------ataacagACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATACTGATGGATATAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 7
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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-----------gtaaacatatttaattaatgataatattaattagtgc--acttcatttcg-actggatat------gctaat-tgtttgataactacagACCTTTGTAGGAACACCATTTTGGATGGCTCCTGAGGTTATTCAAAACTCAGAAGGATATAATGTGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G27300.1 (Glycine max), 3'ss of exon 8
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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-----------gtaagcatatttaattaatgataatattgattagtgc--acttcatttca-actggatat------gctaattgtttgaataactgcagACCTTTGTAGGAACACCGTTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G53165.2 (Arabidopsis thaliana), 3'ss of exon 8
-----gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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aacttgttaagaatt--ttattatgttgagttctcgcctgtgatggtttggtgttattatacaactttcggactgtatttgc--taatg-atataaagttgacagACATTTGTAGGAACACCATTTTGGATGGCACCAGAAGTGATTCAGAACTCCGAAGGTTATAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G15220.1 (Arabidopsis thaliana), 3'ss of exon 8
gctaggaaccaa--tgaaca-tgtctaaaagttgaatggat-cgaatgcctctta--cttcatttcatgatatatatttt-tacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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-------atcaatttgaacaacatctcatctttacttctctgctgatggtttgcaattttcactcattcatctgggttgcgtgcgctgatatgttaaagaatgacagACTTTTGTAGGAACCCCATTTTGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S59_173V6.2 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------------------------------gctaggaaccaatgaac-atgtctaaaa---gttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatg--acagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTC---AGAAGGATATAATGAGAAG
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gtcagttgacttctcaactgtatgtggctttttttgaaagagtagccttatccagcatattggaaccgagtctgtatgcggatgaaccatgtgagcggtttgttacgtggtcttaaaattggtgattttgtctaagaatgaaccgatttaattggaagtctgacatgtcgctgcagACATTTGTTGGAACTCCATTCTGGATGGCGCCAGAGGTCATACAGAACTCTGGAGATGGCTACAATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: PP1S98_82V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------------------------------------------gctag--gaaccaatgaa--catgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgat-atatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTC---AGAAGGATATAATGAGAAG
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gtgagttgtctttacaactaaatatgcagtttcaatcagcagatcaccatccatgtttatctgtgcataaaaaatggttacttgcagcattgaaatcgtatctgtta-ttctacatctcaga-gttggttatttggcatcagaatgatccaatctgattggatggtggatatgttcctcagACGTTTGTTGGAACTCCATTCTGGATGGCTCCAGAGGTTATACAGAACTCTGGAGATGGCTACGATGAGAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ15774 (Selaginella moellendorffii), 3'ss of exon 7
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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---------------------------------------gtaagttttaagatacacctttttataagga---agaagctaactcggt-aacgaaatcagACATTTGTCGGGACACCATTCTGGATGGCACCCGAGGTGATCCAAAATTCAGATGGATATAATGAAAAG
upper sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: EFJ32910 (Selaginella moellendorffii), 3'ss of exon 7
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaac-----aatga---cagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
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----------------------------------------------------gtaagtttaagatacacctttttataaggaagaagctaactcggtaacgaaatcagACATTTGTCGGGACACCATTCTGGATGGCACCCGAGGTGATCCAAAATTCAGATGGATATAATGAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71861562|gb|DT010617.1|DT010617EST: CAGATTTTGGCGTTTCTGCACAATTAACAAGGACAATCTCAAGGAGGAAG ACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCA
genomic: CAGATTTTGGCGTTTCTGCGCAATTAACAAGGACAATCTCAAGGAGGAAGgtactatttt ... acaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
atttcatgatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctaggaaccaatgaacatgtctaaaagttgaatggatcgaatgcctcttacttcatttcatgatatatatttttacactaatgtgtttaacaatgacagACATTTGTAGGAACACCATTCTGGATGGCTCCAGAGGTAATTCAGAATTCAGAAGGATATAATGAGAAG
- - -gaaccaa
- - - - - - - -acatgtc
- - - - - - - - - - - - - - -tgaatgg