1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatcaacccctcctctaaacgagttcatatttctcagtctatatcgtatttttcttctttgccttctcatttaaattaagtggctcacaaaaaatattctcaaatgaaattcacagCTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGACCCTACCCTTCCCGTGGAAGTGACTTATCAACTTGGGAG
species | Vitis vinifera |
transcript | Vv19s0014g01410.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCATCTTATTTTAACAACAAGAACAAGGCATCAGATGAGCAATAT CTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGAEST: gi|34546390|gb|CF514622.1|CF514622
genomic: CAGCACCATCTTATTTTAACAACAAGAACAAGGCATCAGATGAGCAATATgtaatcaacc ... aaattcacagCTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGA
EST: CAGCACCATCTTATTTTAACAACAAGAACAAGGCATCAGATGAGCAATAT CTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGA
genomic: CAGCACCATCTTATTTTAACAACAAGAACAAGGCATCAGATGAGCAATATgtaatcaacc ... aaattcacagCTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGA
ccttctcatttaaattaagtggctcacaaaaaatattctcaaatgaaattcacagCTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGACCCTACCCTTCCCGTGGAAGTGACTTATCAACTTGGGAG
ggctcac putative branch site (score: 3)
aaaaaatattctcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaacccctcctctaaacgagttcatatttctcagtctatatcgtatttttcttctttgccttctcatttaaattaagtggctcacaaaaaatattctcaaatgaaattcacagCTTCGCAATCTTGAAGCTTGTACTTTCCTCGTAGAGCTTGAGCTTCAACGACCCTACCCTTCCCGTGGAAGTGACTTATCAACTTGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG