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...agttgagaaaaaatgaacaggccctactttacttttataggcacttacaatttctggtacattttatgtattaggttaatttgtttaaacaacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACATTTATTTTCAGCTGTTGGGATGGCAAACAACGGTTGGTACAACAGGCT
species | Vitis vinifera |
transcript | Vv18s0122g00680.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|351012854|gb|FQ430417.1|FQ430417
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|351028617|gb|FQ446290.1|FQ446290
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|349827467|gb|FQ422335.1|FQ422335
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|351029607|gb|FQ427447.1|FQ427447
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|351030175|gb|FQ432113.1|FQ432113
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: CATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|351014409|gb|FQ437411.1|FQ437411
genomic: CATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|349832962|gb|FQ423084.1|FQ423084
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACEST: gi|349826098|gb|FQ415903.1|FQ415903
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
EST: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATG GGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
genomic: AAGGCCCCCTGGTATTGCTGCAAAACTCATTGACTGCAGAGCTGCTAATGgtaatcccgg ... aacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGAC
tacaatttctggtacattttatgtattaggttaatttgtttaaacaacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACATTTATTTTCAGCTGTTGGGATGGCAAACAACGGTTGGTACAACAGGCT
attttatgtattaggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgagaaaaaatgaacaggccctactttacttttataggcacttacaatttctggtacattttatgtattaggttaatttgtttaaacaacgtatcagGGTTTTATTACATTGAGTATTGGCTTCAGAATCCTGGGGAAAGTCGTAGACATTTATTTTCAGCTGTTGGGATGGCAAACAACGGTTGGTACAACAGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - -aaaaaat
- - - - - - - - - - gccctac
- - - - - - - - - - - - - - - - - - - - - - - - - tttctgg