Sequence
atgc intronic sequence ATGC exonic sequencegtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 8
gtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
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------gatttacataagtgc-acaatggat---tgctattttattttttttatttttgatgaaaaagaaattc-attaacacaaa-atggaaaaaatcatttatttttcagGACAAGAATGATTTTGAGCAATCAACACTTCCAGCCCTTGTCCCTGTCCTTAGTTCTGCTGCTGGTGAGACACTATTACTGCTTGTGAAGCATGCTGAGC
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 8
gtattaattttgcttgcatgtgataatggat--aagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
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-aaccagatttacataagggc-acaatggactcaatttgaagtttttttttatgaaaaagaaattcattaacccaaaatgaaaaaaataatt------------tatttttcagGACAAGAATGATTTTGAGCAATCAACACTTCCAGCACTTGTCCCTGTCTTTAGTTCTGCTGCTGGTGAGACACTATTACTGCTTGTGAAGCATGCTGAGT
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G71410.1 (Arabidopsis thaliana), 3'ss of exon 8
gtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatatt-gtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
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---------gtaatcttaagtgataacgaa--aactaatttta-----tcttgaa-accactg-actgaa----tgaatgcttgaaagttgaaacctaaaattacctttgcagGATAGAACTGACTTTGAGCTGATAACACTTCCGGCTCTTGTTCCTGTTCTGAGTACTGCTTCAGGAGATACATTACTGCTGCTTGTGAAACATGCAGATC
upper sequence: Vv18s0089g00030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 8
gtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgatt----gcactgctgtcctatgtagataaccattgatgtcttaaa--atatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
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----------------catgtgttacttgg-aagttg-cattgatcttggacaagaatttcttttagatctttactcatgctttaatgatgcttgagaccttaaataatgatttgcagGATAAAAATGACTTTGAGTTGACAACGCTCCCAGCCCTTGTTCCTGTCTTAAGTACTGCTACGGGTGATACATTACTGTTGCTTATAAAGCGTGCAGAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29782673|gb|CB348188.2|CB348188EST: TGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAG GATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTG
genomic: TGATGCAACCAATGATTCTTCCCATGGTTCTCACAATAGCGGAGTCTCAGgtattaattt ... tatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
attgatgtcttaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattaattttgcttgcatgtgataatggataagttgtctttgacctttcttgagcatgattgcactgctgtcctatgtagataaccattgatgtcttaaaatatattgtagGATAAAAATGAGTTTGAGTTATATACTCTGCCAGCTCTTGTTCCTGTCCTGAGTACTGCTTCAGGTGAGACACTATTGCTGCTTGTGAAGCATGCAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC