1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgttgttatacctttcttacatttaatgactatacttccatttttcttagcatttgaactactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATGGTGATGGAGAATCTTACTTTCTGTAGAAGCATTACTCGCCAGTATGATC
species | Vitis vinifera |
transcript | Vv18s0086g00710.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAN GTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATGEST: gi|30125947|gb|CB911286.1|CB911286
genomic: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgtt ... tactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
EST: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAG GTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
genomic: TCACATCGGGGAGCCAAACTTGCCTTGCCAAAATTCTTGGGATTTATCAGgtttgttgtt ... tactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATG
tcttacatttaatgactatacttccatttttcttagcatttgaactactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATGGTGATGGAGAATCTTACTTTCTGTAGAAGCATTACTCGCCAGTATGATC
ctacttt CT-rich tract
atttaatgactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgttatacctttcttacatttaatgactatacttccatttttcttagcatttgaactactttgcagGTAATTATTAGACAGACAAAGAGTGGGAAAGAGATGAGACATGATCTGATGGTGATGGAGAATCTTACTTTCTGTAGAAGCATTACTCGCCAGTATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC