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gtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
species | Vitis vinifera |
transcript | Vv18s0072g00370.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAGTGATCCAG GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTEST: gi|351026053|gb|FQ428065.1|FQ428065
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTEST: gi|351025958|gb|FQ427970.1|FQ427970
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTEST: gi|351024090|gb|FQ423513.1|FQ423513
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTEST: gi|349826424|gb|FQ418515.1|FQ418515
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
EST: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAG GTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
genomic: GGACTCCATGGCCTGGGAACAATGTCAGGGACCATCCTGGAATGATCCAGgtgagggggt ... ccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCT
catactgagatttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
tttttttctctatttt CT-rich tract
acattaaaagattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagggggtgatttctttcttcgagtgcattcatggatttttgtgcctgagcagcatgcatcttgctggaccttctacatactgagatttgagacattaaaagatttttttctctatttttgccttgcacagGTTTTTCTTGGTCATAATGGTGTTCGTGATGTTGAAGGAAATGAGTTGCCTCGTCTAGTTTATGTGTCTCGTGAGAAGAGACCGGGATTTGATCACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA