Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G03180.1 (Glycine max), 3'ss of exon 8
gtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
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gtgagtgcagttggcttgggtgggttttatcaaca-gttagtacatgtctgatg-----tatttgcaatt----tttgtgcagGGATTTAATGGGGCTGATCTTCGAAATGTCTGCACAGAAGCTGGAATGGCAGCAATTCGTGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G37220.1 (Glycine max), 3'ss of exon 8
gtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
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---ggtaagtccagtttggattagttttgttagacaattggtgcatgtttgatg-----tgttttttgttgcaaattgctcaGGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGTGATTATGTGATCCATGAAGATTTTATGAA-
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G07750.1 (Glycine max), 3'ss of exon 8
gtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
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----gtgggtccagtttggattagttttgttagacagttggtgcatgcttgatg-----tgttttttgttgcaaattgctcagGGCTTTAATGGAGCTGATCTTCGAAATGTGTGCACGGAAGCTGGAATGGCAGCAATTCGTGCAGAACGCGATTATGTGATCCATGAAGATTTTATGAAG
upper sequence: Vv18s0001g13090.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G03230.1 (Glycine max), 3'ss of exon 8
gtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
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gtgagtgcagttggcttgggtggattttatcaaca-gttagcgcatgtctgatg-----tatttgcaatt----cttgtgcagGGATTTAATGGGGCTGATCTTCGAAATGTCTGCACAGAAGCTGGAATGGCAGCAATTCGGGCAGAGCGTGATTATGTGATCCATGAAGATTTTATGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110691706|gb|EE070112.1|EE070112EST: TTGCCAAGCATGGCGAGATTGACTATGAGGCTGTTGTAAAGCTTGCAGAG GGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCT
genomic: TTGCCAAGCATGGCGAGATTGACTATGAGGCTGTTGTAAAGCTTGCAGAGgtgagtgaga ... atcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCT
EST:
gi|110423419|gb|EC989765.1|EC989765EST: GCTGTTGTAAAGCTTGCAGAG GGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCT
genomic: GCTGTTGTAAAGCTTGCAGAGgtgagtgaga ... atcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
tcttttc CT-rich tract
aaaatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtgagagaggcttgggtttgttttaactatttgttgccgcatccttaatggaaaatgttctctgttgcaatcttttcagGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA