Sequence
atgc intronic sequence ATGC exonic sequence...ttgagtgtaaattgtttgtcatgaatttttcattcagcaaattgtttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G36310.1 (Glycine max), 3'ss of exon 7
-----ttgagtgtaaattgtttgtcatgaatttttcattcagcaaattgtttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
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ctttttcatccggaaaattcaagtttcaaccgtctctctcaatgttctgtagatata---tatatattttttccttcaatgacttatttat--gttctgttgcagGTATCCAAATCCATCAGCATTCACATATGAAAGGCGTCTTTTTGTTCCTTTTGAATATGCTCTTCAACCTCCTCCTTGGTATAAAGCAGAGCAGATTGCT
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G08860.1 (Glycine max), 3'ss of exon 7
---ttg-agtgtaaattgtttgtcatgaatttttcattcagcaaattgtttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
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cctttgcagtgccatttaat-gtttcaagtttcaactctcttgcaatgttctgtagatgtatttttttt-tccttcaatgacttattgtt--gttctgttgcagGTATCCAAATCCATCAGCATTCACATATGAAAGGCGTCTTTTTGTTCCTTTTGAGTATGCTCTTCAACCTCCTCCTTGGTATAAAGCAGAGCAGATAGCT
upper sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 3'ss of exon 7
ttgagtgtaaattgtttgtcatgaatttttcattcagcaaattgtttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
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----gtaagattttattacc-tgtgatttccatattctctgtttttt-tgtcaggtctgaatgtaacagaatagatgtcttt-ctctgatatt---gcagATACCCCAATCCATCAGCGTTTACATATGAAAAACGTCTATTTTGTCCTTTTGAATATGCGCTCCAACCTCCCCATTGGTATAAAACGGACTCAATTTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254916699|gb|GR905525.1|GR905525EST: TTTCGTGTCCTACCACGTGGAGACTTACTACTTATTGGAGGGGATCTTGC GTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTT
genomic: TTTCGTGTCCTACCACGTGGAGACTTACTACTTATTGGAGGGGATCTTGCgtaagctgga ... tctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
ttctct CT-rich tract
ttatttatttatttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgagtgtaaattgtttgtcatgaatttttcattcagcaaattgtttatattatttatttattttatttcttatttatttatattttggttctctaatagGTACCCTAATCCGTCAGCATTCACATATGAAAGGCGCCTGTTTTGCCCTTTTGAATATGCACTCCAGCCTCCTCCATGGTATAGAGTAGAGCACATAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
-tgagtgt
- - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - -tcagcaa