1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcttttggttaatggaagctttcctatgatagtgataataaggtttggattgctaacttctaacactacaatattctagtaacttaccttgtatttgcagTTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAAAAGAGTTACAAATGGAATTACTCGACTTTCTCAA
species | Vitis vinifera |
transcript | Vv18s0001g09710.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCTTTCCTTCAACTATATATGGTGCTGAACATCTACTACGCCTCTTTG TTAAATTGCCCGAGTTATTATTCCATGCCAACATTGEST: gi|30133633|gb|CB918972.1|CB918972
genomic: TGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTGgtatgatatt ... gtatttgcagTTAAATTGCCCGAGTTATTATTCCATGCCAACATTG
EST: TGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTG TTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAA
genomic: TGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTGgtatgatatt ... gtatttgcagTTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAA
tggattgctaacttctaacactacaatattctagtaacttaccttgtatttgcagTTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAAAAGAGTTACAAATGGAATTACTCGACTTTCTCAA
tacaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttttggttaatggaagctttcctatgatagtgataataaggtttggattgctaacttctaacactacaatattctagtaacttaccttgtatttgcagTTAAATTGCCCGAGTTATTATTCCATGCCAACATTGAAAAGGAGACATCAAAAGAGTTACAAATGGAATTACTCGACTTTCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
-cttttgg
- - - - - aatggaa
- - - - - - - - -gctttcc
- - - - - - - - - - - - - - - - - - - - -ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - tgctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacac