1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactttttgtttaatgtactattctccaaccatggtttaaggaacaagtgatgtgaaaaatatatattgatgctttgactattttttttttctttggtagGGTATCATCGCAACCCTCAAACGGAGCTTTTGTTGCAATTTTTAGAACTGCCCTATCTTCTGGATAACACATTAGAATCAAGAGATCCAACCCACAGTCC
species | Vitis vinifera |
transcript | Vv18s0001g08180.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
aagtgatgtgaaaaatatatattgatgctttgactattttttttttctttggtagGGTATCATCGCAACCCTCAAACGGAGCTTTTGTTGCAATTTTTAGAACTGCCCTATCTTCTGGATAACACATTAGAATCAAGAGATCCAACCCACAGTCC
ctttgactattttttt CT-rich tract
aaaaatatatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactttttgtttaatgtactattctccaaccatggtttaaggaacaagtgatgtgaaaaatatatattgatgctttgactattttttttttctttggtagGGTATCATCGCAACCCTCAAACGGAGCTTTTGTTGCAATTTTTAGAACTGCCCTATCTTCTGGATAACACATTAGAATCAAGAGATCCAACCCACAGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - - ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg