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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacatttgttggttctctattaacctttttttttaattgtttactagaattggtgtctctttctttcttaaagtcttaatcttgaagttaaagaaaagcctcacacactgaagtctctattagccttttttattctttactgaaataggtgtgtttctatttcttgaagAGTTAATGTTGCAGTTCAGCGAGAGCTTCACACACTGGAGTCTGATCGTTCCTGCATACATCTGGAGTTTGACACATCAGGCACTGGTATAAC

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA02G37850.1 (Glycine max), 3'ss of exon 8
gtaaacatttgttggttctctattaacctttttttttaattgtttactagaattggtgtctctttctttcttaaagtcttaatcttgaagttaaagaaaagcctcacacactgaagtctctattagccttttttattctttac--tgaaataggtgtgtttctatttcttgaagAGTTAATGTTGCAGTTCAGCGAGAGCTTCACACACTGGAGTCTGATCGTTCCTGCATACATCTGGAGTTTGACACATCAGGCACTGGTATAAC
                                                                   |  || ||||  |       | ||| |   |  ||       | |    | | || ||  |||      |   |||  |||||  | ||| | |    ||||||||| ||||||||||| |||||  |||| ||||||| | | |||||||||||||| ||||||||| |||||||||||| ||| || ||||| |||| 
------------------------------------------------------------------gtatttgaagttgtgc-----atgttgatttatggctgttgttatt----tttttactaaacttgaaagcttgataccatgaaactgttgtatct----ttcttgaagGGTTAATGTTGCTGTTCAAAGAGAACTTCACAAATTTGAGTCTGATCGTTCTTGCATACATTTGGAGTTTGACATATCCGGGACTGGCATAAT

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G36070.1 (Glycine max), 3'ss of exon 8
gtaaacatttgttggttctctattaacctttttttttaattgtttactagaattggtgtctctttctttcttaaagtcttaatcttgaagttaaagaaaagcctcacacactgaagtctctattagccttttttattctttactgaaataggtgtgtt-tctatttcttgaagAGTTAATGTTGCAGTTCAGCGAGAGCTTCACACACTGGAGTCTGATCGTTCCTGCATACATCTGGAGTTTGACACATCAGGCACTGGTATAAC
                                                                                      | | || |||    || |       |   |    | |||   |||  ||  ||| | |  |||     |||| | | |||||||||| |||||| |||| | |||  |||| ||||||| ||  |||||||||||||| ||||||||| |||||||||||| ||| || ||||| |||| 
--------------------------------------------------------------------------------------gtatttgaagttgtgcatgttgatttatggctgttgttattgtttactaaacttga-tacaatgaaactgttgtatctttcttgaagGGTTAATATTGCCGCTCAAAGAGAACTTCACAAACCTGAGTCTGATCGTTCTTGCATACATTTGGAGTTTGACATATCCGGGACTGGCATAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctattagccttttttattctttactgaaataggtgtgtttctatttcttgaagAGTTAATGTTGCAGTTCAGCGAGAGCTTCACACACTGGAGTCTGATCGTTCCTGCATACATCTGGAGTTTGACACATCAGGCACTGGTATAAC
                                     tgtttctatttctt  CT-rich tract
           ttttttattctttact  TA-rich tract