Sequence
atgc intronic sequence ATGC exonic sequence...gttagggagctattaactgatactcggctatttcgaagcactgctaggtgcaatgaccaattattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G10050.1 (Glycine max), 3'ss of exon 8
---gttagggagctattaactgatactcggctatttcgaagcactgctaggtgcaatgaccaattattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
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tttagtgagggggtataaatt--tgttaatttagtttgttg-actcctgagggcatccctgaattgtaaacacaattcttattcaatgtattgccaatgacagATGAGAATTGATTTTACTGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTGGGTTTCTCTACACAGAAGTGGT
upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G10050.1 (Glycine max), 3'ss of exon 5
----gttagggagctattaactgatactcggctatttcgaagcactgctaggtgcaatgaccaattattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
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tttggtgagggagttcaaatttgttaatttagattgttga----ctactgagggcattcctgaattgtaaacacaattcttattcaatgtattgccaatgacagATGAGAATTGATTTTACTGGGAAAGCTGTATATACTGCAATATGGATTGCTGCTGTGTCATTGTTCATG-AGTTGCTGGGTTTTTCCACACATAA-----
upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G10060.1 (Glycine max), 3'ss of exon 8
----gttagggagctattaactga-tactcggctatttcg-aagcactgctaggtgcaatgacca--attattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
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ttttatcaaatccttcttcattttctgtttggattttttgtgagggaacccaaaattgataatctttatcagcttctcatttaggaaaaattgact--------gcagATGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTTTCGTTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGG
upper sequence: Vv18s0001g07500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G10060.2 (Glycine max), 3'ss of exon 8
gttagggagctattaactgatactcggctatttcgaagcactgctaggtgcaatgaccaattattat-tccaccacagcaatattttcttgcttttg---gcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
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-tttatcaaatccttcttcattttc---tgttttgatctttttgtgagggaacccaaaattgataatctttatcagcttctcatttaggaaaaattgactgcagATGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggtgcaatgaccaattattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
tattttcttgctttt CT-rich tract
aattattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagggagctattaactgatactcggctatttcgaagcactgctaggtgcaatgaccaattattattccaccacagcaatattttcttgcttttggcagATGGGCTTCCAGTTTGCTGGGAAAGCTGTTTATACTGCAATATGGGTGGCTGCTGTTTCATTGTTCATGGAGTTGCTGGGTTTTTCCACCCAGAAATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - ctgatac
- - - - - - - - - - - - - - - - - - -gcactgc
- - - - - - - - - - - - - - - - - - - - - - - - -gcaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccacc