1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ccagaactggtaatcttcatgaaatttgaattgtggttcaagcaattatgatctattattctttttttttttttttaattttataatctatttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATG
species | Vitis vinifera |
transcript | Vv18s0001g06010.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGGAAGGTTCGTCCTGGTGGAGATGGAEST: gi|352776833|gb|FQ472720.1|FQ472720
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGA
EST: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCEST: gi|352773576|gb|FQ472358.1|FQ472358
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTC
EST: TCTTGAGCATGGTGGAACAAGCTGCNAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCEST: gi|352769737|gb|FQ468665.1|FQ468665
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTC
EST: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAEST: gi|352781488|gb|FQ468332.1|FQ468332
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGA
EST: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGAAAAGTTCGTCCTGGTGGAGATGGAEST: gi|352776761|gb|FQ472648.1|FQ472648
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGA
EST: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGA GTTTGGGTTCTAGATGCAACTCCTGGGGAAAGTTCGTCCTG
genomic: TCTTGAGCATGGTGGAACAAGCTGCAAAACCTCTTGCACGACCAGTCAGAgtaagtttga ... tttttattagGTTTGGGTTCTAGATGCAACTCCTGGG-AAAGTTCGTCCTG
ttatgatctattattctttttttttttttttaattttataatctatttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATG
ttttaat putative branch site (score: 3)
tctattttt putative PPT
ttttttttttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccagaactggtaatcttcatgaaatttgaattgtggttcaagcaattatgatctattattctttttttttttttttaattttataatctatttttattagGTTTGGGTTCTAGATGCAACTCCTGGGAAAGTTCGTCCTGGTGGAGATGGAGAGGATCATCCAGAGGAACTAATATCTTTCCTTAGTAAAATGCCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - cttcatg
- - - - - - - - - - - - - - - ttgtggt
- - - - - - - - - - - - - - - - - - -tcaagca