Sequence
atgc intronic sequence ATGC exonic sequence...atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os12g07110.1 (Oryza sativa), 3'ss of exon 7
----------------------------------------------------------atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattg-----ctctaagtgaac-----tgt-cattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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gtaagattatgaataccatcatcccatgttgttagttgccatccttgtttaatgaactatgtttaaacacaatgaaatcataaatttaaaca-caatgaagaatgaactatgcttatttgtttcaacatgcatagagacctgggaattaacaagtttatgcaatttcagGGTTCCAATAGGGCAAGGGTATGGTCTTACTGAGACATGTGCTGGAGGAACATTTTCTGAGTATGATGACCCATCTGTTGGTCGCGTTGGTGCTCCACTA
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os11g06880.1 (Oryza sativa), 3'ss of exon 2
------------------------------------------------------------------atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttg---ttgtaattgctctaagtgaactgtcat-----------tttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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gtgagatagtactcttcattattttataagccattctcaagtctcttttgttaatatcaagttattgtttttggtc-cacttgtgtt-tactgtgattgaacttcacaatattcaaatctaacttgcatactgcattttaaaccaaaacaattgacaggttttgggttgtgctgttgcagGGCTCCAATAGGGCAAGGATATGGTCTTACTGAAACATGTGCTGGCGGGACATTTTCCGAGTATGATGACAATTCTGTTGGCCGTGTTGGTGCTCCATTG
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G118286_T01 (Zea mays), 3'ss of exon 7
---------------------------------------att-taaggaaacacttagctggca----atgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaat-tgctctaagtgaactgt---cattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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gtaagattatgtatgcctcatttctgttgtttgatggcaattatcttgaaatcctatgttcccatcgcatgcatttaatacgataaatatgttatgacttcctcactgtgtttgcagtctgacattgataaggtttatgcaatttcagGGCTCCAATAGGGCAAGGTTATGGTCTGACTGAAACTTGTGCTGGAGGGACATTTTCAGAGTATGATGACACATCTGTCGGTCGTGTTGGTGCTCCACTA
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G117064_T01 (Zea mays), 3'ss of exon 5
---------------------------------------------------------------------------------------atttaag--gaaacacttagctgg-caatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcat-tttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
|||| ||||| | || | | | | |||| || ||| | ||| | | | | ||||| | |||| ||| | || ||| ||||||||| |||||| |||||| |||| || | ||||||||||| |||||||| ||||||||||| |||||||||||||| |||||| | || |
gtgagattcaagttttctttttttcattgacattctcaatttgtgttaaacgccaattgcatctgttgtccactttttgtttcacaaatttggattcaaacattcgaatgaatagtttgcagggatcaaaacaattgtttcattttacttacagt-gcagaaattgata-gtgtgatttgtgttattgcagGGCTCCAATATCTCAAGGATATGGCTTGACTGAAACCTGTGCTGGTGGGACATTTTCAGAGTATGATGAAACATCTGTTGGTCGCGTTGGTCCCCCTTTG
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G11860.1 (Glycine max), 3'ss of exon 6
-------atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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tagaattgtctagctttatcatgtactttttctgttttgct-ttacagatt-tcctgtattatcttttttct-gtcacatttatatttggt----tttcattttcagTGCTCCAATAGGTCAAGGATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTT
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 6
atttaaggaaacact--tagctggcaatgtcctacaatc---atgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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-----aggaaatatttctagcttttactgtagtgctttttcttttttgctttttgcgtttcctttattattcttgctgtcatttataatttatggtcatattcagTGCTCCAATCGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTCGGCCGTGTTGGACCACCTCTT
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA14G23710.1 (Glycine max), 3'ss of exon 6
atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattgctctaa---gtgaactgtcatttt-cagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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---aaaggaaata-ttactggcttttactcaagtgctttttcttttttgatttttgcgtttcctttattatttattctgtgatttataatttatggtcatatagTGCTCCAATCGGTCAAGGATATGGTCTCACAGAGACTTGTGCTGGTGGGACATTCTCTGATGTTGATGATACATCTGTTGGCCGTGTTGGACCACCTCTT
upper sequence: Vv18s0001g02810.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 3'ss of exon 7
atttaaggaaacacttagctggcaatgtcctacaatcatgc-agtatgcaatattatccttcctcttgttgtaattgctctaagtgaac--tgtcattt-tcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
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------gtaaacgaatccctgaatatctccttgaggcttgctactctccaatat-atcttttcgtccctttccatttctatgatctaacactgatattcctcagGGCTCCAATCGGTCAGGGATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716236|gb|FC065864.1|FC065864EST: GGGGCTCCTCTTTCTAGTGATACTCAAAGATTCATCAATATTTGTCTTGG TGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTAC
genomic: GGGGCTCCTCTTTCTAGTGATACTCAAAGATTCATCAATATTTGTCTTGGgttagtatct ... tcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
tcattttc CT-rich tract
ttgtaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttaaggaaacacttagctggcaatgtcctacaatcatgcagtatgcaatattatccttcctcttgttgtaattgctctaagtgaactgtcattttcagTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTT
- - - ggaaaca
- - - - - - - -tagctgg
- - - - - - - - - - - caatgtc
- - - - - - - - - - - - - - - - - -tcatgca
- - - - - - - - - - - - - - - - - - - - - gtatgca