1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcttgtcacgtttgacaaattcacaggtctaatgtctctctctctctctctccccctgtgtctctcttactaacaagttcatgtgatgatgttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGCCCACTTATTCCTCCTCCGCCCTCATCAAAGAAGCCAACTAGTGCAGAT
species | Vitis vinifera |
transcript | Vv18s0001g01180.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTCATGAGGATGATGAATCAGAAGATGATTTTGNCCAGTTAGCCCACAG GTCACAGGGCAGGAAATCAGCCAATEST: gi|32269534|gb|CD718693.1|CD718693
genomic: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAGgtgactgtta ... gttattacagGTCACAGGGCAGGAAATCAGCCAAT
EST: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAG GTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGEST: gi|110696101|gb|EE074878.1|EE074878
genomic: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAGgtgactgtta ... gttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAG
EST: CTCATGAGGATGATGAATCAAAAAA-GAATTTTGCCCAGTTAGCCCACAG GTCACGGGGCAGGAAATCAEST: gi|294966615|gb|GW839606.1|GW839606
genomic: CTCATGAGGATGATGAATCAGAAGATGA-TTTTGCCCAGTTAGCCCACAGgtgactgtta ... gttattacagGTCACAGGGCAGGAAATCA
EST: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAG GTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGEST: gi|110686103|gb|EE063415.1|EE063415
genomic: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAGgtgactgtta ... gttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAG
EST: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAG GTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAG
genomic: ACTCATGAGGATGATGAATCAGAAGATGATTTTGCCCAGTTAGCCCACAGgtgactgtta ... gttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAG
ctctctccccctgtgtctctcttactaacaagttcatgtgatgatgttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGCCCACTTATTCCTCCTCCGCCCTCATCAAAGAAGCCAACTAGTGCAGAT
tactaac putative branch site (score: 0)
atgttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgtcacgtttgacaaattcacaggtctaatgtctctctctctctctctccccctgtgtctctcttactaacaagttcatgtgatgatgttattacagGTCACAGGGCAGGAAATCAGCCAATGCAAAGCCTGAACCACTGCGAGTCAGCCCACTTATTCCTCCTCCGCCCTCATCAAAGAAGCCAACTAGTGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - acaaatt
- - - - - - - - - - - - - - - - tgtctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtga