1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcttgtgatgcttgtggagatggatgagttaaatagaaacttgatcttgttgtgatgcttctgtgcttatattatttcatactgtttctatatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTCTTTGCTATCTTCTCTGTGATCAACCTGATACCGCCCTCCGGGATGCAA
species | Vitis vinifera |
transcript | Vv18s0001g00180.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAG TTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTEST: gi|22012691|gb|BQ797725.1|BQ797725
genomic: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAGgtatgtatgt ... atatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGT
EST: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAG TTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTEST: gi|34543647|gb|CF511879.1|CF511879
genomic: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAGgtatgtatgt ... atatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGT
EST: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAG TTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGT
genomic: TAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAGgtatgtatgt ... atatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGT
tcttgttgtgatgcttctgtgcttatattatttcatactgtttctatatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTCTTTGCTATCTTCTCTGTGATCAACCTGATACCGCCCTCCGGGATGCAA
tttctat CT-rich tract
ttatattatttcatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttgtgatgcttgtggagatggatgagttaaatagaaacttgatcttgttgtgatgcttctgtgcttatattatttcatactgtttctatatttccagTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTCTTTGCTATCTTCTCTGTGATCAACCTGATACCGCCCTCCGGGATGCAA
- - - tgatgct
- - - - - gcttgtg
- - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - aatagaa
- - - - - - - - - - - - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgc