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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgcatgattgaattatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG

Basic information

species Vitis vinifera
transcript Vv17s0053g00780.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 8
gtatatgcatgattgaattatata-ctaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
||     |||| || | | |  |  || ||  ||   |       |   | | ||  |||||     |  | ||   |  ||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| ||  | 
gttgtgacatgtttaactcaattgtcttatctgatgttgtcaccttagaaacgtttttaacactgtcttctgtttggcttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGA

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 8
gtatatgcatgattgaattatata-ctaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
||     |||| || | | |  |  || ||  ||   |       |     | ||  ||||||   ||    ||   |  ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||  |||| |||||||||||||||||||| ||  | 
gttgtgacatgtttaactcaattgtcttatctgatgttgtcaccttagatacgtttttaacattgtttttcgtttggcttagTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGA

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G06190.1 (Glycine max), 3'ss of exon 8
--------------------gtatatgcatgattgaattatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
                      ||   | |  |||| | || |  | |      |    | || | |  | |||  |      | || ||| |    | ||||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||| | ||||| || ||  | 
gttgacatatatagtcaacttaatcgacttatttgattcatgttgtgacctaggagaggttttctaaagttttttattcttattttttattgttcgtatagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACAGTATATCAGTTCTTCGA

upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G33520.1 (Glycine max), 3'ss of exon 8
----------------gtatatgcatgattga-attatatactaattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
                  ||   | |  |||| ||| |   |||   |     | ||    | ||   |||  |    | | || ||| ||     ||||||||||||| ||||| || |||||||| |||||||||||| | || ||||||||    || ||||||||||| ||||| || ||  | 
gttgacatagtcaatttaatcgacttatttgatattgtgacctaggagaggttttctaaagttattcatttgtttttttatttttattgtccgtttagTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27579995|gb|CB002690.1|CB002690
EST:     CTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAG                         TGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCA
genomic: CTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGgtatatgcat ... ttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattggaaactactgttatgatatctttagtaacatgtgttaattttcttcacagTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGG
                                           ttttcttcac  CT-rich tract
               ttatgatatcttta  TA-rich tract