Sequence
atgc intronic sequence ATGC exonic sequence...gtcatttactctcatgtttgagatgcaacttaaaacttatttttgctattttctttttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G13650.1 (Glycine max), 3'ss of exon 9
-----------------------------------------------------------------------------gtcatttac-tctcatgtttgagatgcaacttaaaactt-atttttgctattttctt-tttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
| ||| ||| || ||| | |||| ||| | | | | || | | |||| ||| ||||||||| |||||||||||||| || |||||||| ||||| ||| |||||||| ||| ||||||||| | |||| || |||||| || ||||||| |||
gtagagttgttttaatcaagaggaattacatatggaaatgaccataatagtgggtagaatattgagaattagttatagacatcagggtctaatttttttttttttttttaactctttactatcgtaatgtagtaacttccctcaattcagGTTGCCTTGCTAGACTATGGACAGGTGAAGGATCTCCC-AGATCAGTTGAGGCTTGCCTATGCTAATCTAGTTCTTGCGATTGCTAATGGTGACCCATTAA-------------------
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G02990.1 (Glycine max), 3'ss of exon 9
----------------------gtcatttactctcatgtttgagatgcaactta--aaacttatttttgctattttctt-tttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
|| | || ||| | | | | || ||||| | | || | | |||| ||| ||||||||| |||||||||||||| || |||||||| ||||| ||| |||||||| ||| ||||||||| | |||| || |||||| | ||||||| |||
gtgggtagaatattgagaattagttttagacaacagtgtctaattttttattttttaaactcaccatcctaatgtagtaacttccctcaattcagGTTGCCTTGCTAGACTATGGACAGGTGAAGGATCTCCC-AGATCAGTTGAGGCTTGCCTATGCTAATCTAGTTCTTGCAATTGCTAACGGTGACCCATTAA-------------------
upper sequence: Vv17s0000g10260.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G50330.2 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------gtcatttactctcatgtttgagatgcaact-----taaaacttatttttgctattttctttttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
|| ||| | | | || | | | | | | | | | | | | |||| || | | | ||||||||||||| |||||||| ||||||||||| || |||| |||||||||| |||| ||||| |||||| | | || || |||||||| | | |
gcaagtcatattttgcttgtagtcattatttggtagttttttaattcgcttagtgttaccttctggcagaacttgcccgtctatatagtctgagttgtaatcttgtttcccgtcattagGTTGCATTGCTGGACTATGGTCAAGTGAAGGAACTACCCA-ACAAGTTGAGACTTGGTTATGCAAATTTGGTCATTGCCATGGCTGATAACAATGCTTCAC------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctattttctttttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
ttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcatttactctcatgtttgagatgcaacttaaaacttatttttgctattttctttttccaccaagtcaggttgcattgctagactatgggcaagtgaagGACCTCCCCAGACAAGTTGAGGATTGGATATGCTAATTTGATTCTGGCTATTGCTGATAATGACCCAGTAAAGGCATCAGAAAGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - -actctca
- - - - - - - - - - - atgcaac
- - - - - - - - - - - - - - - -aaaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattg