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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcctctctctctctctctatctatctatcttgttctcaacacaccgactcactatttttttctgttactctgtgtttttgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g07900.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G09970.1 (Glycine max), 3'ss of exon 8
gtcctctctctctctctctatctatctatcttgttctcaacacaccgactcactatttttttctgttactctgtgtttttgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGAG
|| | ||  |  ||  ||  | | | ||| |  || |    | |  ||   | ||    | |    ||     |  | ||   |||||||||||||| ||| | || |||||||| |||||||| ||  | || |||||| |||||||||| || || ||   ||||||||||||||||||| ||||| 
gttcacttgccatccttccctgt-tttatgtgcttgtgtgaaaatgga---agtagccatattgactaactaatcctcttat-atgcagATAGTGGTGCTTCGCACGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTTCAACACACTGTATTCCATCGGCAATGTCTGATGATCTTAAGTCATGAT

upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G01930.1 (Glycine max), 3'ss of exon 8
gtcctctctctctctctctatctatctatcttgttctcaacacaccgactcactatttttttctgttactctgtgtttttgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGAG
    || ||  |  ||  |  |  | |    || |      | |  | |  | ||   || |    ||     |  | ||   |||||||| ||||| ||| | |  |||||||| |||||||| ||  | || |||||| |||| ||||| || || |||  ||||||||||||||||||| ||||| 
--gttcacttgccatccttccccgttttatgtgcttgtgtgaaaatggc--agtagccttattaactaactaatcctcttat-atgcagATCGTGGTGCTTCGCATGAAGACTGCAAAAGCAGCTACTCTTGATATTCTTGCAACGCACTGTATTCCATCAGCAATGTCTGATGATCTTAAGTCATGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426445|gb|EC992856.1|EC992856
EST:     TAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACCAGCAG                         ATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTT
genomic: TAGAGAGCTGTGATGACGAATTTTTGAAATTTGATCTAGAATACCAGCAGgtcctctctc ... tgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcaacacaccgactcactatttttttctgttactctgtgtttttgcgatgcagATAGTGGTCCTTAGAACAAAGACTGCCAAAGCAGCAACATTGGACATTCTTACAACACACTGCATACCTTCAAAAATGTCTGATGATCTTAAGACATGAG
            gactcac  putative branch site (score: 2)
                                       tgttttt  putative PPT
                   tatttttttctgtta  TA-rich tract