Sequence
atgc intronic sequence ATGC exonic sequence...agttactatcctttgtcttctcttgcaaatgctgataataagagtcgaattttcatgtatttaaagcaaattcatgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G343442_T01 (Zea mays), 3'ss of exon 9
agttactatcctttgtc-ttctcttgcaaatgctgataataagagtcgaattttcat--gtatttaaagcaa--attcatgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
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--acatttccttctgccattaatatacacaattcattaactag-gtcttattttcataagaattgaagatcatgattaacatcttcttttgtatttgtaat--agGCTAACTGCTCAGTATGTGAATCTGATGTTAGTGGTGCAACTGCTTTGAGCTCTACTGCTGCTTCAAGTGATTTATATGGAACTCAAGCAATCGGTTCAT
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA17G13080.1 (Glycine max), 3'ss of exon 8
agttactatcct--ttgtcttctcttgcaaatgctgataataagagtcgaattttcatgtatttaaagcaaatt-catgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
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agtctaggttgaggccatggagcattataaatg--agttgaaagtgcagcagttaaatatgctaatctcatttttcacatgctcttgtaaat-caatctgcagGCAAATTGTGCTGTTTGCAAAGTTGATAATGGTGGAGCGACAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGT
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G07920.1 (Glycine max), 3'ss of exon 8
agttactatcctttgtcttctcttgcaaatgctgataataagagtcgaattttcatgtatttaaagcaaattcat-gcaattttacgtct-tcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
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agt--ctaggttgaggctgtagagcattatgatattagttgaaagtgcatcagttaatatgctaattacattttttgcatgcttgtgtaaatcaatctacagGAAAATTGTGCTGTTTGCAAAGTTGATAATGATGGAGCAACAGCTTTGAGCTGTTCAGCTTCCTGTAAAGATTTATATGGAACTCAGTGCATTGGTTTGT
upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 3'ss of exon 8
------agttactatcc--tttgtcttctcttgcaaatgctgataataagagtcgaattt--tcatgtatttaaagc--aaattcatgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
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gtttatacctactactcgagttattcttccctgacgcctctg-taaccatttctgaactaagccatgaacctcatatctggattctcttttttttttttgatccaattgcagGCAAATTGTGCTGTCTGTAAAGCTGATGATAGTGGTGCAATGTGCTTGAGCTCATCTCCTTCTTGCAGGGACCTATTTGGAACTCATTCTATTGGAATGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaattttcatgtatttaaagcaaattcatgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
cgtcttc CT-rich tract
tttcatgtatttaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agttactatcctttgtcttctcttgcaaatgctgataataagagtcgaattttcatgtatttaaagcaaattcatgcaattttacgtcttcaaagtgcagGCAAATTGTGCTGTTTGCAAAGCAGATGATAGTGGCGCAACTGCTTTGAGCTCTTCTGCTTCTTGTAAGGATTTATATGGAACCCAGTGCATTGGCTTAT
- - - - - - - - - -ctcttgc
- - - - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - aataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca