1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ttccacatccacacacacacacaaacactgatagggtgtggttatagtgcacttgaagttgttataattttgagcttattgctgattgctttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGAAAAGATTATCTCTGAGCTGAACATGGAACTTCACAACATCGAGATCACC
species | Vitis vinifera |
transcript | Vv17s0000g03970.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTACGCTCCAAGTTACAGTCAGCAAACGATGAGAATGGACAAAAGAAGAG TGATAATTTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTACCAAAGAEST: gi|161718930|gb|FC066668.1|FC066668
genomic: CTACGCTCCAAGTTACAGTCAGCAAACGATGAGAATGGACAAAAGAAGAGgtaagatata ... ttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGA
EST: GACAAAAGAAGAG TGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGAEST: gi|30301790|gb|CB978584.1|CB978584
genomic: GACAAAAGAAGAGgtaagatata ... ttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGA
EST: CTACGCTCCAAGTTACAGTCAGCAAACGATGAGAATGGACAAAAGAAGAG TGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTACCAAAGA
genomic: CTACGCTCCAAGTTACAGTCAGCAAACGATGAGAATGGACAAAAGAAGAGgtaagatata ... ttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGA
agtgcacttgaagttgttataattttgagcttattgctgattgctttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGAAAAGATTATCTCTGAGCTGAACATGGAACTTCACAACATCGAGATCACC
ttgcttt CT-rich tract
aagttgttataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccacatccacacacacacacaaacactgatagggtgtggttatagtgcacttgaagttgttataattttgagcttattgctgattgctttgattgcagTGATAATCTAGATTCAAATAGTATACTTGAAAATTCTTTGAGTGCCAAAGAAAAGATTATCTCTGAGCTGAACATGGAACTTCACAACATCGAGATCACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
-tccacat
- - - - ccacaca
- - - - - acacaca
- - - - - - - - - - - - - -ctgatag
- - - - - - - - - - - - - - - - - ggtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - gcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgattgc