Sequence
atgc intronic sequence ATGC exonic sequence...acagctagattcatgttagaaacaccctttctattatacaatcttctatgctggccattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA05G33980.1 (Glycine max), 3'ss of exon 8
acagctagattcatgttag--aaacaccctttc--tattataca-atcttctatg----ctggc-cattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCAC---TCCAGAGGCAGCATGCTTCCTTGCCT
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----caaaattcctaatggctaattttcttttctgtattccgcatgtcatctaagaactctaacatgttattggttgtcaattctatattatctttttgcgt------agTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTA---
upper sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA08G05700.1 (Glycine max), 3'ss of exon 8
-----acagctagattcatgttagaaacaccctttctattatacaatcttctatgc-tggccattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCAC---TCCAGAGGCAGCATGCTTCCTTGCCT
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atctaagaactctagcatggaaagtgtagttctttgaaattttaaaagttttacacattttggtaattagttggtaattctatattatctttttgcgt------agTGGGGTCGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCACCATTGCAGAGACAGCATGCCTCCTTA---
upper sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G30790.1 (Glycine max), 3'ss of exon 8
-----------acagctagattcatgttagaaacaccctttctattatacaatcttctatgctggccattctcaagtgctaaccca-gtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
| | || || || |||| || | | | || | || | ||| | ||| ||| || | ||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||| | |||||| || || ||||| |||
gattcttgtacaagttttgactcttg--agaagcaactgatagttgattgtcttttttctgcatgtcatct--aagaactgtgtaatgtgttatctttttgc--------agTGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGTTGAGGCAACACGCCTCCTTACCT
upper sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA07G11470.1 (Glycine max), 3'ss of exon 8
acagctagattcatgttagaaacaccctttctattatacaatcttctatgctggc-cattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
| | | ||||| | | || | || | ||||| | | | |||| | |||| | | |||| | ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| || | |||||| || || ||||| |||
-cttttttctgcatgtcatctaagaactgtgtaatgcgggatctttaaaaccattgctttcttggaatttttatcagtaagtttgtgttatccttttgcagTGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACACCGTTGTTGAGGCACCACGCCTCCTTACCT
upper sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G18040.1 (Arabidopsis thaliana), 3'ss of exon 8
acagctagattcatgttagaaacaccctttctattatacaatcttctatgctggccattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
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gtatataaaaacat-ttagaatccgtgttcaaaatttactacgaattatgagaagtgaagataaagattt------tgtaatctaa--atgaaaatgcagTGGTGTTGATCGCTTTAAGAGACAATTTGCTCATCTTGAGGAAAATTACGGTAAGGGTGAGAAAGGCTCACCTCTTCAACGCCAACACGCTTCCTTGCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgctggccattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
tgctaac putative branch site (score: 1)
tgttatctttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acagctagattcatgttagaaacaccctttctattatacaatcttctatgctggccattctcaagtgctaacccagtgttatctttttatgtcaatctagTGGTGTTGATCGGTTTAAGCGACAGTTTGCTCATCTTGAAGAGCATTATGGTAAAGGTGAAAGAAGCACTCCACTCCAGAGGCAGCATGCTTCCTTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - tcatgtt
- - - - - - - - -agaaaca
- - - - - - - - - - - - ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - ctggcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccca