Sequence
atgc intronic sequence ATGC exonic sequence...taatatcattgttacatggtagtctttcaccaggggctatatagaatcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G36900.1 (Glycine max), 3'ss of exon 9
--taatatcattgttacatggtagtctttcaccaggggctatatagaatcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
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aacaacattcatacgaataaattgtctgctggtaaaacttaactagaaacttctagacttttggcatgaacctcagtgagttactgcctttat--tttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTAGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAGCTGTCAGATTTGGTTGATGAAG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G18080.1 (Glycine max), 3'ss of exon 8
taatatcattgttacatggtagtctttcaccag---gggctatatagaatcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
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-aacaacattcatacagataaattgtgtactggtaaaacttaacttgaaacttttagacttttggcatgagcctcagtgagttactgcctttat--tttgcagTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAG
upper sequence: Vv17s0000g01850.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G48500.2 (Arabidopsis thaliana), 3'ss of exon 7
-taatatcattgttacatgg--tagtctttcaccaggggctatatagaatcaataatacaagcggccttt--gatt------aattgtctgcatttttatatgctat--gcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
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gtattttcctgagcaaaagggttggttatgtgatttttgctttgtttactcattaggtttattggctttctaaattttgtgaaaccgtcaacacatttctttcccgtttgcagTTGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAAAATACGAAGGCAAAAAGCTATCAGAATTATCTGATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
gattaat putative branch site (score: 3)
atttttatatgctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taatatcattgttacatggtagtctttcaccaggggctatatagaatcaataatacaagcggcctttgattaattgtctgcatttttatatgctatgcagTTATGGCAGATCCATGTTGCTGAGCAAATGATTTTGGATGATATGGAGGTTAATCCTCATAAATATGAGGGCAAAAAGCTGACAGAGTTAACTGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - tacatgg
- - - - - - - - - - - - -ttcacca
- - - - - - - - - - - - - - - - - - - - - -gaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcctttg