Sequence
atgc intronic sequence ATGC exonic sequence...agctctgttttctctttgatgcatcttaacttagggcctctattttcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g70360.1 (Oryza sativa), 3'ss of exon 7
agctctgttttctctttgatgcatcttaacttagggcctctattttcattt---ttcataaatat-ttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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gggtatgttattactggattttttttt--ctgaaacttttaagagttgttcaaactggtagggatgtactatatggtattga-ctagtaaaacatatga-atagGTTTACACATACATGGACGAGGCACACAGTATTGGAGCTGTTGGGAAAACAGGAAGAGGTGTGTGTGAGCTACTAGGAGTGGATCCGGCTGATGTTGACA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 3'ss of exon 7
-----------------------------------------------------------agctctgttttct--ctttgatgcatcttaacttagggcctctatt--------ttcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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gtttgagaatttcactcaccgacttatgctctttcttcagaccattcgtgtgggcatgtagacctatttactggcatataaaaacttcagctttcacctgctactaaaagagacagatgtttactgagtaattgagtat-tgactattgtacttaaccttctgg-atagGCTTACACATATTTAGACGAGGCACACAGTATTGGAGCTGTTGGTAAAACCGGGAGAGGTGTTTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 3'ss of exon 7
---------------------------------------------------------------------------------------agctctgttttctctttgatgcatc---ttaacttagggcctctattttcatttttcataaatattt--ttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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gttcaagaatttcttacactgacttcttgtatatgttctttcttcagatcattaagcatgtaaatctttttttaatcaaaagcttgtaaatctgtttactgtcatatacattacttcaacttttatcagctattaaaatcg---ataaatatttactgagttttgactattgtacttaaatttctgg-acagGCTTACACATATTTAGATGAGGCACACAGCATTGGGGCTGTTGGTAAGACAGGGAGAGGTGTTTGTGAATTACTTGGAGTGGACCCAGCGGATGTTGATA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G010202_T01 (Zea mays), 3'ss of exon 7
agctctgttttctctttgatgcatcttaacttagggcctctattttca-tttttcataaatatttttgtttgtcat-----ttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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------acataccagtttatgactcagtttatagaaattagattctcagtttcttaaaaactgggttgcttccaaacagggcctaatatacctcacatatgaacagGCCTACACATATCTAGACGAAGCACACAGTATTGGAGCTGTTGGGAAAACAGGGAGAGGTGTTTGTGAGCTGCTCGGAGTGGATCCAGCTGATGTTGACA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 3'ss of exon 7
---------------------------------------------agctctgttttctc--tttgatgcatcttaacttagggcctcta---ttttcatttttcataaatatttttgtttgtcatttttctatctttctat--ttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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gtgaggcaacataataaatcatcttttatgttcaacattgatgagagattaagaaactcaatcaactaaactatcatttgcaacatcaaagttgtctagactaatttgattgtctgatgcgtaacttaacttcttcaatattcttgtttcagGCATATGTTTACTTGGACGAAGCTCACAGCATTGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTTGGAGTTGACACTTCTGATGTGGACA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G48790.1 (Arabidopsis thaliana), 3'ss of exon 3
agctctgttttctctttgatgcatcttaacttagggcctct-attttcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgt-agGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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---------------gtaaggtaacatggtaaaccatctttcaagatcaacattgatgagtgattaaggtactctatcaactgaattatcattttgtttcagGCATATGTTTATTTGGACGAAGCTCATAGCATTGGAGCAATTGGCAAAACAGGACGAGGTGTTTGTGAACTCCTAGGAGTTGACACTACTGAAGTGGACA
upper sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G23670.2 (Arabidopsis thaliana), 3'ss of exon 7
-agctctgttttctctttgatgcatcttaacttagggcctct----attttcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
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tgactaaaattaccctttgaaatgccatattttctaaactattgggagttttttgttgcgtgaaaagatacaccta--acttatct---tctatcttcgtttcagGCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAGGAAAGGGTATTTGTGAACTCCTGGGAGTTGACACAGCTGATGTGGACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542640|gb|CF510872.1|CF510872EST: ACTTGCAATCCAGCGGTGCATGCTACAGATATGCAAGCATGACTTATAAG GCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACA
genomic: ACTTGCAATCCAGTGGTGCATGCTACAGATATGCTAGCATGACTTATAAGgtgttttatt ... tttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
tcatttttctatcttt CT-rich tract
tttcataaatattttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctctgttttctctttgatgcatcttaacttagggcctctattttcatttttcataaatatttttgtttgtcatttttctatctttctatttggtgtagGCATATGTTTACTTGGATGAGGCACACAGTATTGGAGCAGTTGGGAAAACAGGAAGAGGTGTCTGTGAGCTCTTAGGTGTGGATACCGCTGATGTGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - -gatgcat
- - - - - - - - - - - - - - - - - -gcctcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - ataaata