Sequence
atgc intronic sequence ATGC exonic sequencegtggtttatgtcatcaatgagcacttttgttgacttttagtatactgctattcttgatcaagtgttttctgatttatactagagttttatgcctgaccctgcttgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G37710.1 (Glycine max), 3'ss of exon 8
------------gtggtttatgtcatcaatgagcacttttgttgacttttagtatac-tgctattcttgatcaagtgttttctgatttatactagagttttatgcctgaccctgcttgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
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gtagttttgaaaaaagcatgcattccacccccccccccctcttta-ttctaccatatgtatcagctctgatcaattattctccggtgta------agtttta-gct--atcttctttgtatttgtcagAACCTAAAAGATGATGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGTCTCTTCGCACAATGACACAAAGAATGATTTTGACCC
upper sequence: Vv17s0000g00390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G17390.1 (Glycine max), 3'ss of exon 8
gtggttt-----atgtcat-caatgagcacttttgttgacttttagtatactgc-tattcttgatcaagtgttttctgatttatactagagttttatgcctgaccctgcttgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
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gtagttttgaaaaaagcatgcatcccccccccctccccccttttattgtaccatgtatatctgctctgatcaatcattctctggtgtaagatttagct----atcttctttatatttgtcagAACCTAAAAGATGACGCTACAGCAGCTTTGGAACAACAGCAAGAAGCTGAAGCTGAAGCAAAGGCCCTTCGCACAATGACACAGAGAATGATTTTGACCC
upper sequence: Vv17s0000g00390.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT3G48860.2 (Arabidopsis thaliana), 3'ss of exon 8
gtggtttatgtcatcaatgagcacttttgttgacttttagtatactgctattcttgatcaagtgttttctgatttatactagagttttatgcctgaccctgct-tgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
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--------------------------gtaaggttcactgatgtactgttttctatgagatgtaccacttttatttgcattatgaaaccatgtcttatttttctctgctatgttcagAACTTGAAAGATGAGGCTACAACTGCTGCAGAACGGCTTCAAGAAGCAGAGTCTGAAGCGAAGTCTCTTCGCACAATGACTCAGAGGATGATTTTAACAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgttttctgatttatactagagttttatgcctgaccctgcttgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
gcctgac putative branch site (score: 3)
cttgttt putative PPT
atttatacta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggtttatgtcatcaatgagcacttttgttgacttttagtatactgctattcttgatcaagtgttttctgatttatactagagttttatgcctgaccctgcttgtttgaatcagAACTTGAAAGATGGTGCCACAACTGCTATAGAACAACTTCAAGAAGCAGAATCTGAAGCAAAAGCTCTTCGCTCCATGACAAAAAGAATGATTTTGACTC
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