1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctgtgatctgttgaaatgtgattggtgatgatgaagtgggcaccccacagtatcgacccattgcttaactgtggacttttttttttcgttttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCTTGCCATCACAGTGGATTCTACATCCTCGGTGACAATCAGGGAGAGAGA
species | Vitis vinifera |
transcript | Vv17s0000g00160.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|32245130|gb|CD710949.1|CD710949
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|27582433|gb|CB005128.1|CB005128
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|71879114|gb|DT028169.1|DT028169
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|18458200|gb|BM436478.1|BM436478
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|32244907|gb|CD710726.1|CD710726
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|71878554|gb|DT027609.1|DT027609
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|30321764|gb|CD005026.1|CD005026
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCEST: gi|30253400|gb|CB970951.1|CB970951
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
EST: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAG GTACATCAATAGGGAAGAGGTAAGCAAGAACAGATGAACTTGGGGTACCCC
genomic: TGCTAAGTCTTTGACTGCTGCAGGGATCTCATACAAGATTGATATAACAGgtactcagtt ... tttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCC
ccacagtatcgacccattgcttaactgtggacttttttttttcgttttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCTTGCCATCACAGTGGATTCTACATCCTCGGTGACAATCAGGGAGAGAGA
gcttaac putative branch site (score: 3)
cttttttttttcgttt putative PPT
acttttttttttcgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtgatctgttgaaatgtgattggtgatgatgaagtgggcaccccacagtatcgacccattgcttaactgtggacttttttttttcgttttttttcagGTACATCAATAGGGAAGAGGTATGCAAGAACAGATGAACTTGGGGTACCCCTTGCCATCACAGTGGATTCTACATCCTCGGTGACAATCAGGGAGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - ctgttga
- - - - - - - - - -tgattgg
- - - - - - - - - - - - - - - - - - - - - -ccccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - cgaccca