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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC

Basic information

species Vitis vinifera
transcript Vv16s0100g00690.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G38270.1 (Glycine max), 3'ss of exon 7
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattact--aattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
||| ||   || | || |      || |  ||    |||      ||| ||   | |  |               | || |||||| |  || |   || |  ||  |   | |||||||| ||||||||| |||| || |||||||| |||||||||||||||| |||||||||||||| ||||||| |   ||||||    ||  ||| ||| 
gtaagacattgtaaataggaa---ttttagtgaaaactt------tcactcgcttggtaa--------------caagtaacattaatgcaaatttgatttttattccccct-agGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCTCAATACCTACATTCTCTCATTCA

upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G29590.1 (Glycine max), 3'ss of exon 7
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
||| ||   || |      |         || ||||||      |||| |           || || ||  |  |       | ||| ||||  ||| |   |  | |   |||||||| ||||||||| |||| || |||||||| |||||||||||||||| |||||||||||||| ||||||| | | ||| ||    ||  ||| ||| 
gtaagacattgtaagactgtaaataggaatt-tttgctcaaactttcact-----------tgcttggtaacgattaacattaatacaaatttgaatttttttcccct---agGTGGCTTCCTCTTGATATTGCTAGGATGTGGGGGCGTCATTGGCTTGAACAATTGCTGGCACCCAGTTCTGATGCCACAATGCCTACATTCTCTCATTCA

upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G32090.1 (Glycine max), 3'ss of exon 7
gtatgatcctgcagatggatggtcttctgttgtttgct-tctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttc--agGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
                            ||    | || |   ||   |||   ||| | ||  |||   | |  ||  | |||| | | ||  | || || ||   ||| |  || ||||| || |||||||||||  | |||||||| ||||||||||||||||||||| || |||| | ||||||| | | |||| ||   || ||| |||| 
----------------------------gtaagatactgttaatggaaattttagta-caaacttttaccttcccta--taacataaatgatatagatttgaatttttttccccagATGGCTTCCACTTGATGTTGCTCGGATGTGGGGGCGTCATTGGCTTGAACCATTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA

upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G26560.1 (Glycine max), 3'ss of exon 7
gtatgatcctgcagatggatggtcttctgttgtttgcttctgtgttcattcatgtagctaatgttttgttgctgtaggtgacattactaattgaaatctg---cataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
                            ||    | ||| |      |    |  | ||||  ||   || |  ||  | |||| | | ||  |||| ||     |  |  | ||| ||||| || ||||||||||| || |||||||| || |||||||||||||| ||| || |||| | ||||||| | | |||| ||   || ||| |||| 
----------------------------gtaagatacttttaatggaaactttagaactaactttacattccc-tatataacataaatgatgtaaatttgattttttcccctccagATGGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGCCATTGGCTTGAACCTTTGTTGACACCTACTTCTGATGCCACAATATCATCATTCCCTTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgttttgttgctgtaggtgacattactaattgaaatctgcataacttttcagGTGGCTGCCTCTTGATGTTGCCAGAATGTGGGGCCGTCATTGGCTTGAACCATTGCTGGCACCCAATTCTGATTCAATAATACCAGTGTTTCCTCCTTCC
                                               cttttc  CT-rich tract
                        attactaattgaaat  TA-rich tract