1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgtaaattgtttagttttccctttattttttcctttgagaatgaagaagaggtcatacattcttgtttacttgaacctgatacaaccactcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCAAAAGATGCAGGAGATGGAACAGCTTGCAAATGTTCAGGGTCTGCCGAC
species | Vitis vinifera |
transcript | Vv16s0100g00500.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG ATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCEST: gi|161705769|gb|FC056640.1|FC056640
genomic: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGgtaaggttcc ... tcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
EST: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG ATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCEST: gi|161720327|gb|FC071180.1|FC071180
genomic: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGgtaaggttcc ... tcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
EST: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG ATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCEST: gi|161708994|gb|FC058786.1|FC058786
genomic: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGgtaaggttcc ... tcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
EST: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG ATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCEST: gi|161710271|gb|FC060655.1|FC060655
genomic: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGgtaaggttcc ... tcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
EST: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTG ATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
genomic: TATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGgtaaggttcc ... tcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGC
agaagaggtcatacattcttgtttacttgaacctgatacaaccactcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCAAAAGATGCAGGAGATGGAACAGCTTGCAAATGTTCAGGGTCTGCCGAC
acctgat putative branch site (score: 4)
ctcatct putative PPT
atacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaaattgtttagttttccctttattttttcctttgagaatgaagaagaggtcatacattcttgtttacttgaacctgatacaaccactcatctgcagATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCAAAAGATGCAGGAGATGGAACAGCTTGCAAATGTTCAGGGTCTGCCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - -cccttta
- - - - - - - - - - - - - - - - - - -gagaatg
- - - - - - - - - - - - - - - - - - - - - - aagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaacca