Sequence
atgc intronic sequence ATGC exonic sequencegtctgctttctgagtttactaatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G38370.1 (Glycine max), 3'ss of exon 8
--gtctgctttctgagttta-ctaatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagc--actgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
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gtatgtcctctatgaattcaactaatttggttccatctttttgctgggtaaacattattttttttatttttttgatcatcaaatcaattgctgcagGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG
upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G29480.1 (Glycine max), 3'ss of exon 7
--gtctgctttctgagtttac-taatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG-------------
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gtatgtcctctatgaattgacctaatttggttccatctttgcagtgaagcattatttttttcatcatcaaat---caattgctgc-------agGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGGTATTAGTTTCTT
upper sequence: Vv16s0100g00480.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G29480.2 (Glycine max), 3'ss of exon 7
--gtctgctttctgagtttac-taatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
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gtatgtcctctatgaattgacctaatttggttccatctttgcagtgaagcattatttttttcatcatcaaat---caattgctgc-------agGTATACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCTGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
atctgat putative branch site (score: 4)
ataatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctgctttctgagtttactaatttgtcttcatctagaaactattcagttagtagcataatgatctgatatacaagcactgctggcctcagGTTTACTCTCTCAAACATGACATCACAGATGTGCGGTGTCTCATGCCAGGCCTAATCCTGGCCATTAGAAAGGTCGTGCGGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG