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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatcaagggaaaccacttgttgcatcttattatgtttttccttgattcattataacttcattcgaatgcagcagctgacatgttcttctctttctcagATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGG

Basic information

species Vitis vinifera
transcript Vv16s0098g01020.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G14060.3 (Glycine max), 3'ss of exon 8
gtaagttatcaagggaaaccacttgttgcatcttattatgtttttccttgattcattataacttcattcgaatgcagcagctgacatgttcttctctttctcagATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGG
                    | || || ||| || ||  ||  |  |  ||    |  ||  ||| |     |  | | | |   ||    | |   ||  |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||
-----------------gtaagttctt-cattttgttgagtgatagcaagaaagctgctagattcttct---tttatccgttt-tataacatacagctttgcagATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGG

upper sequence: Vv16s0098g01020.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA04G40740.3 (Glycine max), 3'ss of exon 8
gtaagttatcaagggaaaccacttgttgcatcttattatgtttttccttgat--tcattataacttcattcgaatgcagcagctgacatgttcttctctttctcagATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGG
                    | || || ||| || ||   |  | ||  ||    |   |  ||| |  |   ||        | ||||      | ||||  |||||||||||| | ||||||||||| ||||||||||| ||||| || ||||||||||||
-----------------gtaagttctt-cattttgttgaatgataccaagaaagccgcca-gactcctcttttatctgttttataacata-----cacttttgcagATTCGGAAATTGGATGACACTGAGTTTAGAAATCCCTGGGCGAGAGCTTATATTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcattataacttcattcgaatgcagcagctgacatgttcttctctttctcagATTCGGAAACTTGATGACACTGAATTTAGAAATCCTTGGGCAAGGGCTTATATTCGG
                                   catgttcttctctttc  CT-rich tract
     attataacttcatt  TA-rich tract