Sequence
atgc intronic sequence ATGC exonic sequence...taaactgatagagattgaatctggaagttgctctattattattttaggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtggcagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA13G08160.1 (Glycine max), 3'ss of exon 8
taaactgatagagattgaatctggaagttgctctattattattttaggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtgg---cagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
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---gctgacatatactgtagcaactagtgtcacattaaggaatgttgtgatatgttggctgttagggatgttcattttcatatcacttttctttcatgctcagGTTTGTTGGAGTTGGTGCTCGACGTGTTAGATCCTTATTTCAAGCAGCCAAAAAGAAG
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA06G13140.1 (Glycine max), 3'ss of exon 8
---taaactgatagagattgaatctggaagttgctctattattattttaggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtggcagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
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aatcagttaggtccaatccattcctaataattacattaaggg-atgttatgctgtgt-tggttgttaggtatgctcaatttcatatcacttttc-catttcagGTATGTTGGAGTTGGTGCTCGACGTGTAAGATCCTTATTTCAAGCAGCAAAAAAGAAG
upper sequence: Vv16s0050g02630.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------------------------------------taaactgatagagattgaatctggaagttgctctattattattttaggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtgg----cagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
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gtgagccttcttctagctatctttctctggcatttgccttaggcaacattatcattatcta-tttagtaattatttca--atcaggtggcttcttcaataatggataatgtcttctaatatcatgtttttttcccttcgatttacagGTTTGTTGGGGTAGGAGCTCGCCGTGTGAGATCCTTGTTTCAGGCAGCCAAGAAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtggcagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
ttgctttct CT-rich tract
ttatatagat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaactgatagagattgaatctggaagttgctctattattattttaggcattatatagatgtcaggtactttgaagctcaagttgctttctgtgtggcagGTTTGTTGGGGTTGGTGCTCGGCGTGTAAGATCCTTATTTCAAGCAGCTAAAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
-aaactga
- - - - - - - - - - - - - - - - - - - - - - - ggcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct