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gtagtttttgcctatattgatgctaaaaccagtcaaaatcagtacatatactcataaaaattgtgtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACATTTGAAGGAGGACATAAAATTGGCATCGTTGGACGAACTGGCAGTGGGA
species | Vitis vinifera |
transcript | Vv16s0050g02480.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATCCATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTTGTGGGATCAACTGCACAEST: gi|110699494|gb|EE076542.1|EE076542
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACAEST: gi|294964669|gb|GW838472.1|GW838472
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACAEST: gi|110713613|gb|EE089685.1|EE089685
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACAEST: gi|32268391|gb|CD717550.1|CD717550
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATCCATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTTGTGGGATCAACTGCACAEST: gi|30323099|gb|CD006361.1|CD006361
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATCCATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTTGTGGGATCAACTGCACAEST: gi|30300431|gb|CB977225.1|CB977225
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: TGGACATACATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACAEST: gi|37184105|gb|CF603459.1|CF603459
genomic: TGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACAEST: gi|32249769|gb|CD715588.1|CD715588
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATCCATGATTTACAG ATTAGGTATAGACCCGACACACCCCTTGTTCTTTGTGGGATCAACTGCACAEST: gi|30300354|gb|CB977148.1|CB977148
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
EST: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAG ATGATCTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
genomic: CCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGgtagtttttg ... gtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACA
atgctaaaaccagtcaaaatcagtacatatactcataaaaattgtgtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACATTTGAAGGAGGACATAAAATTGGCATCGTTGGACGAACTGGCAGTGGGA
tgctaaa putative branch site (score: 2)
atatactcataaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttttgcctatattgatgctaaaaccagtcaaaatcagtacatatactcataaaaattgtgtcaaagcagATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACATTTGAAGGAGGACATAAAATTGGCATCGTTGGACGAACTGGCAGTGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA