Sequence
atgc intronic sequence ATGC exonic sequencegtaatctatgaggaatcggttttctgttctaagtctgagagtcctagctatcacattcatgcttgatcttgttttgatgatgtgttatattactaacagGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G23250.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------gtaatctatgaggaatcggttttctgttctaagtctgagagtcctagct----atcacattcatgcttgatctt-gttttgatgatgt-gttatattactaacagGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGA
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gtgatttaataactgaaaacgtattttagaagttcttatttaaattgcatctaacgacaacctttttggcagcatctacgtgagatgagtataacaaatttgtcacatggctatcttcaagtagagtttttacactaacaagatcattgtaatttttgcagCTTTTGGTTTTTATCACAGAAACTAGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCGTTCTCCAATCACCAAGGTTATATAATTTACTACAAA
upper sequence: Vv16s0050g01830.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA16G29040.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------gtaatctatga-ggaatcggttttctgttctaagtctga--gagtcctagct--atcacattcatgcttgat-cttgttttgatgatgtg----ttatattactaacagGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGA
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gtgatttaattactgaaaacttattttaccagttcatatttaaattgtatctaacgtcaacctttgttggcaacatttacatgagatgagtataacgaatttgtcacttggctatcttcaagtagagttcttacactaataacaagataattgtaatatttgcagCTTTTGGTTTCTATCACAGAAACTGGTTCCATCATTTTATACATCAGGGATGTTGAGAAGCTCATTCTCCAATCACCAAGGTTATATAATTTACTACAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagctatcacattcatgcttgatcttgttttgatgatgtgttatattactaacagGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGA
ttttgat putative branch site (score: 4)
tgttatattactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctatgaggaatcggttttctgttctaagtctgagagtcctagctatcacattcatgcttgatcttgttttgatgatgtgttatattactaacagGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC