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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggataagaaaaacactttgttctttctttgttagctgagattggcatgcttgcttccatcctccattcctgcactgacgaatactgatgctatacacataaaaatgtcagGACCAAAGACAAAGATGAATGAGAGCTTCAATTGCAACCAAGCACCGGCAAAGCTTTTTACCTTCCCATTCTGGTGCTATTACTTCCTGTCATAATGCCA

Basic information

species Vitis vinifera
transcript Vv16s0050g01180.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32269462|gb|CD718621.1|CD718621
EST:     AGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGG                         GACCAAAGACAAAGATGAATGAGAGCTTCAATTGCTACCAAGCACCAGCAA
genomic: AGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGGgtaaggataa ... aaaatgtcagGACCAAAGACAAAGATGAATGAGAGCTTCAATTGCAACCAAGCACCGGCAA
EST: gi|110414040|gb|EC979863.1|EC979863
EST:     AGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGG                         GACCAAAGACAAAGATGAATGAGAGCTTCAATTGCAACCAAGCACCGGCAA
genomic: AGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGGgtaaggataa ... aaaatgtcagGACCAAAGACAAAGATGAATGAGAGCTTCAATTGCAACCAAGCACCGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatcctccattcctgcactgacgaatactgatgctatacacataaaaatgtcagGACCAAAGACAAAGATGAATGAGAGCTTCAATTGCAACCAAGCACCGGCAAAGCTTTTTACCTTCCCATTCTGGTGCTATTACTTCCTGTCATAATGCCA
                          tactgat  putative branch site (score: 2)
                                   tatacacataaaaat  TA-rich tract