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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggattttcaacaaccctgctgaaatactataggttcttcaatgcattctttttacactctttaacatttttcttttctatttttgcacagTGCCTCTTCCCACAGTATGCTTTGGAATTCATTAAGACACCCTTTTTTATCTTAAACTCAGCATATGATGTGTACCAA

Basic information

species Vitis vinifera
transcript Vv16s0050g00570.t01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251614|gb|CB969347.1|CB969347
EST:     AAAAGAATCTACATGAAAACTGCACAAGTTCTCTCCATTATCCACATCTA                         TGCCTCTTCCCACAGTATGCTTTGGAATTCATTAAGACACCCTTTTTTATC
genomic: AAAAGAATCTACATGAAAACTGCACAAGTTCTCTCCATTATCCACATCTAgtaggatttt ... ttttgcacagTGCCTCTTCCCACAGTATGCTTTGGAATTCATTAAGACACCCTTTTTTATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcaatgcattctttttacactctttaacatttttcttttctatttttgcacagTGCCTCTTCCCACAGTATGCTTTGGAATTCATTAAGACACCCTTTTTTATCTTAAACTCAGCATATGATGTGTACCAA
                       ctttaac  putative branch site (score: 3)
                     ctctttaacatttttc  CT-rich tract
                      tctttaacatttttct  TA-rich tract