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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcagAATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAGAAGTACATGACCAAAGCTTTTCATAACATTAAGGCAATGTGTCAATCAC

Basic information

species Vitis vinifera
transcript Vv16s0039g02720.t01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: LOC_Os02g43470.1 (Oryza sativa), 3'ss of exon 8
gtaattccctctatatttcttatatatcatgggttttatgaaaaattatatcgtttgaaacacagataattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcagAATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAGAAGTACATGACCAAAGCTTTTCATAACATTAAGGCAATGTGTCAATCAC
                                ||  ||  | | |  || | ||          |||  ||     | ||  || | | |  || || |   ||       |||| || ||||| ||||| || || |||||||| ||||||||||||||    ||||| || ||||||||||  || |||||||| ||||| ||||  |||||  |||| |
--------------------------------gtaatagaacagaagattttgtgccttctttggatctttcccatg-aatctaatggca-tatgtttgtgctacg---cctatggtg-cagAACATTCAGGGCTTCATGTGGGATGAAGAGAAGGTGAACAGGGAGCTCCAAAAGTACATGAAGAACGCTTTTCAGAACATCAAGGACATGTGCAAATCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37190533|gb|CF609882.1|CF609882
EST:     CTATTTTGAGTGGGTTCAG                         AATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAG
genomic: CTATTTTGAGTGGGTTCAGgtaattccct ... atgttggcagAATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgatggggaaagtagtagtaacatcttaggattaatggttttatgttggcagAATATTCAAGGTTTTATGTGGGAAGAAGAGAAGGTGAATTATGAGCTTCAGAAGTACATGACCAAAGCTTTTCATAACATTAAGGCAATGTGTCAATCAC
                                 attaatggttttat  TA-rich tract