Sequence
atgc intronic sequence ATGC exonic sequencegtatgttatcttcaacttgggaaaattttattatcaaactcatacacaataatgttactatgaaatattttctggttattatattttacattttttccctttgttgatgcagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GRMZM2G040158_T02 (Zea mays), 3'ss of exon 8
gtatgttatcttcaacttgggaaaattttattatcaaactcatacacaataatgttactatgaaatattttctggttattatattttacattttttccctttgttgatg-cagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
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----gtactaaaaaattttggatgttgtcgagttcaatatatctctttccaaaataattgtgacatgtgtacacgtcaaaaggtttgcttactgtccctgtcatttctatcagTTGAAAGTCGTTGGTCCTGTTGCTGTACTTGGAGGTCTGCTTCAGATTGTTCTGTTCATGTTCTTGTGTGGCCTCACTGCAGCG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 9
-gtatgttatcttcaacttgggaaaattttattatcaaactcatacacaataatgttactatgaaatattttctggttattatattttacattttttccctttgttg-atgcagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
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tatatattatcctcgtct----aaggcttttgatttgggtttgtaga--------ttgcta--aaacttttccttctgtttccattttctaattttaaattttcttgcatgaagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTACTTCAAATTATCATTTTTATGTTCATGTGTGGCATTCTTTCCATG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgt-tatcttcaacttgggaaaattttattatcaaactcatacacaataatgttactatgaaatattttctggttattatattttacattttttccctttgttgatgcagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
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gtaggtatatccttacatttgactaacttgaata-caatttcatgt---------cgactttgcaatatcactctgacaatctgttgt------tcttgtgttaatgctacagCTGAAAGTCGTTGGCCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGTAACTGCCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatgaaatattttctggttattatattttacattttttccctttgttgatgcagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
tgttgat putative branch site (score: 4)
ttttacattttttccc CT-rich tract
aaatattttctggtta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttatcttcaacttgggaaaattttattatcaaactcatacacaataatgttactatgaaatattttctggttattatattttacattttttccctttgttgatgcagTTAAAAGCTGTGGGACCTGTTGCTGTTCTTGGAGGGCTGCTTCAAATTTTTATATTTATGTTCTTGTGCGGTGTAACTGCCATG
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