Sequence
atgc intronic sequence ATGC exonic sequencegtatgtttcctttggatgactctttgagtatttatatttctatatctagtaaacttttgattaaatgtttattgattgggaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA20G29010.1 (Glycine max), 3'ss of exon 6
gtatgtttcctttggatgactctttgagtatttatatttctatatctagtaaactt---ttgattaaatgtttattgattgg--gaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
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------------------gtatgttaaatatttga--tttgatttccaataattttgtcctcattgtcactttcttgtttcattgaatttcagGGACATATCATATAATCGGATTACTGGGGAGATTCCATATAATATTGGATTTCTGCAAGTTGCTACTTT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: GLYMA10G38730.1 (Glycine max), 3'ss of exon 9
-------gtatgtttcctttggatgactctttgagtatttatatttctatatctagtaaactt---ttgattaaatgtttattgattgg--gaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
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gtatgttatgtattttatttgatattcatgtgttatgttcaatatttgatttccaataattttgtcctcattgtcactttattgtttcattgaatttcagGGACATATCGTATAATCAGATTACTGGGGAGATTCCATTTAATATTGGATTTCTGCAAGTTGCTACTTT
upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 8
lower sequence: AT5G62230.2 (Arabidopsis thaliana), 3'ss of exon 9
gtatgtttcctttggatgactctttgagtatttatatttctatatct-agtaaacttttgattaaatgtttattgattgggaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
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gtatgtgccatcttaaa------ttaaacattagacttccactataggagtgaattttggactca-taccttttgat-----attacagGGACATATCTTATAATCAGATAACAGGAGAGATTCCTTACAATATCGGCTTCCTCCAAGTTGCTACTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatttctatatctagtaaacttttgattaaatgtttattgattgggaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
tattgat putative branch site (score: 3)
taaacttttgattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtttcctttggatgactctttgagtatttatatttctatatctagtaaacttttgattaaatgtttattgattgggaatttcagGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT