1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttagcttggattcatctccaagttttgctgatagcgccaaatttatacaaggatacatgaagttgttccaattgtttaatgcaagttttcttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGT
species | Vitis vinifera |
transcript | Vv15s0048g02540.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|27585271|gb|CB007966.1|CB007966
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|34546174|gb|CF514406.1|CF514406
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTTTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|30131544|gb|CB916883.1|CB916883
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|30327031|gb|CD010293.1|CD010293
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTTTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|34545179|gb|CF513411.1|CF513411
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTTTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|32248937|gb|CD714756.1|CD714756
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTTTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAEST: gi|30134124|gb|CB919462.1|CB919462
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
EST: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGGTTTGAGAAGAAG GTTCGATACCAAAGCAGGAAAAGGCTTGCAGAG-AGCGTCCCCGAGTGAAA
genomic: CTCTAATGAAGTTTAGATTGAAACGGAAAGATCGTTGCTTTGAGAAGAAGgtatgttaat ... cttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAA
atacaaggatacatgaagttgttccaattgtttaatgcaagttttcttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGT
tcttaac putative branch site (score: 2)
ttttctt CT-rich tract
aattgtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttggattcatctccaagttttgctgatagcgccaaatttatacaaggatacatgaagttgttccaattgtttaatgcaagttttcttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -agcttgg
- - - - - - -catctcc
- - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - -ccaaatt
- - - - - - - - - - - - - - - - - - - - - - - -acaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcaa